Wall clock time and date at job start Mon Mar 30 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99549 * 2 1 4 4 H 1.48499 * 109.47447 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46837 * 119.99963 * 3 2 1 6 6 H 1.48504 * 109.46756 * 239.99778 * 3 2 1 7 7 C 1.37869 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99918 * 18.74023 * 7 2 1 9 9 C 1.50693 * 120.00465 * 198.73981 * 7 2 1 10 10 H 1.09002 * 109.50532 * 305.59394 * 9 7 2 11 11 C 1.53152 * 109.51312 * 185.45613 * 9 7 2 12 12 C 1.53320 * 109.46991 * 170.86603 * 11 9 7 13 13 N 1.46298 * 108.76400 * 50.18762 * 12 11 9 14 14 N 1.39752 * 128.31341 * 162.85475 * 13 12 11 15 15 C 1.30974 * 106.58407 * 180.13155 * 14 13 12 16 16 N 1.33477 * 109.00340 * 359.96841 * 15 14 13 17 17 C 1.30325 * 109.72835 * 359.97428 * 16 15 14 18 18 C 1.50926 * 127.90849 * 180.02562 * 17 16 15 19 19 H 0.97000 * 119.99478 * 174.66625 * 1 2 3 20 20 H 1.09003 * 109.46748 * 290.89233 * 11 9 7 21 21 H 1.09000 * 109.46608 * 50.87803 * 11 9 7 22 22 H 1.08998 * 109.64146 * 290.37001 * 12 11 9 23 23 H 1.09011 * 109.54552 * 169.94301 * 12 11 9 24 24 H 1.08005 * 125.50261 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.71749 * 44.44159 * 18 17 16 26 26 H 1.08993 * 109.75071 * 283.81620 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1939 0.0005 8 1 1.5076 -2.1046 -0.2996 9 6 3.4516 -1.2284 0.4198 10 1 4.0198 -0.5127 -0.1744 11 6 4.0140 -2.6362 0.2019 12 6 5.5329 -2.6175 0.4096 13 7 5.8258 -1.9585 1.6825 14 7 7.0071 -2.0001 2.4280 15 6 6.8040 -1.2633 3.4917 16 7 5.5655 -0.7676 3.4470 17 6 4.9666 -1.1768 2.3642 18 6 3.5631 -0.8636 1.9060 19 1 -0.4849 -0.8365 -0.0781 20 1 3.5578 -3.3238 0.9141 21 1 3.7902 -2.9636 -0.8134 22 1 6.0072 -2.0685 -0.4038 23 1 5.9105 -3.6399 0.4320 24 1 7.5230 -1.0848 4.2776 25 1 3.3611 0.1990 2.0400 26 1 2.8479 -1.4495 2.4832 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059464.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:45 Heat of formation + Delta-G solvation = 74.889554 kcal Electronic energy + Delta-G solvation = -12030.332427 eV Core-core repulsion = 9917.313100 eV Total energy + Delta-G solvation = -2113.019327 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.79191 -36.65466 -33.33471 -32.02148 -30.09370 -28.98486 -25.15344 -23.40733 -21.75359 -20.58980 -18.59015 -17.73145 -16.25025 -15.59102 -14.59145 -14.26595 -13.77365 -13.61164 -13.17076 -12.64757 -12.03103 -11.72090 -11.64259 -10.78806 -10.57233 -10.42494 -10.04700 -9.85089 -9.59270 -9.26747 -9.07488 -8.88193 -8.33823 -6.60674 -4.24989 2.08701 2.77579 3.30841 3.35873 3.39922 3.53344 4.37150 4.63277 4.84726 5.12434 5.23879 5.35945 5.46521 5.66229 5.98367 6.01904 6.33429 6.39451 6.56198 6.75471 6.84883 6.90659 7.10112 7.32849 7.87167 8.22747 8.58778 8.73907 9.44860 10.79114 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.050546 B = 0.013102 C = 0.011611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.816322 B = 2136.551558 C = 2410.913275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.036 3.964 3 Si 1.039 2.961 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.605 4.605 8 H 0.061 0.939 9 C 0.019 3.981 10 H 0.029 0.971 11 C -0.118 4.118 12 C 0.126 3.874 13 N -0.376 5.376 14 N -0.339 5.339 15 C 0.185 3.815 16 N -0.558 5.558 17 C 0.295 3.705 18 C -0.055 4.055 19 H 0.270 0.730 20 H 0.065 0.935 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.211 0.789 25 H 0.097 0.903 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 -2.702 1.590 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.868 3.132 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.208 1.208 7 C -0.642 4.642 8 H 0.079 0.921 9 C -0.001 4.001 10 H 0.047 0.953 11 C -0.157 4.157 12 C 0.004 3.996 13 N -0.166 5.166 14 N -0.168 5.168 15 C -0.117 4.117 16 N -0.286 5.286 17 C 0.020 3.980 18 C -0.095 4.095 19 H 0.080 0.920 20 H 0.084 0.916 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.227 0.773 25 H 0.115 0.885 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.531 -1.288 1.659 9.760 hybrid contribution 0.219 -1.766 -0.143 1.785 sum 9.750 -3.054 1.516 10.329 Atomic orbital electron populations 1.70866 1.06983 1.31188 1.43841 1.25776 0.96107 1.02446 0.92775 0.84097 0.75589 0.76088 0.77473 1.20777 1.19785 1.20846 1.21809 0.94554 0.96638 1.51189 0.92063 1.19136 0.98655 0.92028 0.90293 0.95275 1.21986 0.89737 1.00815 1.03127 1.22062 0.99144 0.97384 0.81017 1.50294 1.09385 1.37697 1.19253 1.77776 1.05379 1.25978 1.07660 1.25964 0.94251 0.94822 0.96693 1.70359 1.07329 1.29514 1.21426 1.25162 0.96233 0.89024 0.87608 1.21426 0.84129 1.04100 0.99826 0.91968 0.91606 0.89338 0.90004 0.89793 0.77288 0.88465 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.70 55.43 0.76 -25.19 15 2 C 0.04 0.96 5.34 -17.82 -0.10 0.87 15 3 Si 1.04 23.84 26.56 -169.99 -4.51 19.33 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 5 H -0.27 -5.85 5.43 56.52 0.31 -5.55 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.60 -15.44 8.78 -34.45 -0.30 -15.74 15 8 H 0.06 1.67 7.99 -52.49 -0.42 1.25 15 9 C 0.02 0.40 1.70 -91.47 -0.16 0.24 15 10 H 0.03 0.64 6.76 -51.93 -0.35 0.29 15 11 C -0.12 -2.09 5.19 -26.49 -0.14 -2.23 15 12 C 0.13 2.01 7.30 -3.99 -0.03 1.98 15 13 N -0.38 -7.16 4.04 -58.28 -0.24 -7.40 15 14 N -0.34 -6.33 12.74 29.38 0.37 -5.95 15 15 C 0.19 3.23 13.04 -91.38 -1.19 2.04 15 16 N -0.56 -11.29 11.18 -11.83 -0.13 -11.42 15 17 C 0.30 6.06 7.72 -155.78 -1.20 4.86 15 18 C -0.05 -1.17 5.26 -27.54 -0.14 -1.31 15 19 H 0.27 7.76 8.73 -40.82 -0.36 7.40 15 20 H 0.07 1.17 8.12 -51.93 -0.42 0.75 15 21 H 0.09 1.46 8.12 -51.93 -0.42 1.04 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.08 1.16 8.14 -51.92 -0.42 0.73 15 24 H 0.21 2.63 8.06 -52.48 -0.42 2.21 15 25 H 0.10 2.15 5.00 -51.93 -0.26 1.89 15 26 H 0.09 2.02 8.11 -51.93 -0.42 1.60 15 LS Contribution 219.35 15.07 3.31 3.31 Total: -1.00 -29.67 219.35 -6.51 -36.18 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -2.81 Total: 0.43 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -3.26 Total: -9.28 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.77 Total: -49.96 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.51 Total: 19.33 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -29.67 -6.51 -36.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059464.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.072 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds