Wall clock time and date at job start Mon Mar 30 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99549 * 2 1 4 4 H 1.48499 * 109.47447 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46837 * 119.99963 * 3 2 1 6 6 H 1.48504 * 109.46756 * 239.99778 * 3 2 1 7 7 C 1.37869 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99918 * 18.74023 * 7 2 1 9 9 C 1.50693 * 120.00465 * 198.73981 * 7 2 1 10 10 H 1.09002 * 109.50532 * 305.59394 * 9 7 2 11 11 C 1.53152 * 109.51312 * 185.45613 * 9 7 2 12 12 C 1.53320 * 109.46991 * 170.86603 * 11 9 7 13 13 N 1.46298 * 108.76400 * 50.18762 * 12 11 9 14 14 N 1.39752 * 128.31341 * 162.85475 * 13 12 11 15 15 C 1.30974 * 106.58407 * 180.13155 * 14 13 12 16 16 N 1.33477 * 109.00340 * 359.96841 * 15 14 13 17 17 C 1.30325 * 109.72835 * 359.97428 * 16 15 14 18 18 C 1.50926 * 127.90849 * 180.02562 * 17 16 15 19 19 H 0.97000 * 119.99478 * 174.66625 * 1 2 3 20 20 H 1.09003 * 109.46748 * 290.89233 * 11 9 7 21 21 H 1.09000 * 109.46608 * 50.87803 * 11 9 7 22 22 H 1.08998 * 109.64146 * 290.37001 * 12 11 9 23 23 H 1.09011 * 109.54552 * 169.94301 * 12 11 9 24 24 H 1.08005 * 125.50261 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.71749 * 44.44159 * 18 17 16 26 26 H 1.08993 * 109.75071 * 283.81620 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1939 0.0005 8 1 1.5076 -2.1046 -0.2996 9 6 3.4516 -1.2284 0.4198 10 1 4.0198 -0.5127 -0.1744 11 6 4.0140 -2.6362 0.2019 12 6 5.5329 -2.6175 0.4096 13 7 5.8258 -1.9585 1.6825 14 7 7.0071 -2.0001 2.4280 15 6 6.8040 -1.2633 3.4917 16 7 5.5655 -0.7676 3.4470 17 6 4.9666 -1.1768 2.3642 18 6 3.5631 -0.8636 1.9060 19 1 -0.4849 -0.8365 -0.0781 20 1 3.5578 -3.3238 0.9141 21 1 3.7902 -2.9636 -0.8134 22 1 6.0072 -2.0685 -0.4038 23 1 5.9105 -3.6399 0.4320 24 1 7.5230 -1.0848 4.2776 25 1 3.3611 0.1990 2.0400 26 1 2.8479 -1.4495 2.4832 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059464.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:45 Heat of formation + Delta-G solvation = 56.613610 kcal Electronic energy + Delta-G solvation = -12031.124932 eV Core-core repulsion = 9917.313100 eV Total energy + Delta-G solvation = -2113.811832 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.24124 -38.23150 -35.07854 -33.76299 -31.65053 -30.48441 -26.98138 -24.91194 -23.20231 -22.23944 -20.14766 -19.72397 -17.69429 -17.03520 -16.12954 -15.82313 -15.49104 -15.11086 -14.80030 -14.34332 -13.73834 -13.27461 -13.14017 -12.51952 -12.26498 -12.08805 -11.71978 -11.59057 -11.08843 -11.00007 -10.66996 -10.41696 -10.33781 -8.73419 -6.37739 0.62361 1.39997 1.49732 1.52670 1.71542 1.95341 2.47623 2.98558 3.28921 3.50469 3.88527 3.95555 4.11692 4.31732 4.45763 4.52631 4.72049 4.85898 4.98633 5.24297 5.37564 5.42167 5.52706 5.82589 5.97139 6.06462 6.59664 7.14658 7.39664 8.65711 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.050546 B = 0.013102 C = 0.011611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.816322 B = 2136.551558 C = 2410.913275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.011 4.011 3 Si 1.073 2.927 4 H -0.290 1.290 5 H -0.251 1.251 6 H -0.262 1.262 7 C -0.598 4.598 8 H 0.033 0.967 9 C 0.016 3.984 10 H 0.034 0.966 11 C -0.111 4.111 12 C 0.126 3.874 13 N -0.377 5.377 14 N -0.346 5.346 15 C 0.189 3.811 16 N -0.578 5.578 17 C 0.279 3.721 18 C -0.047 4.047 19 H 0.257 0.743 20 H 0.060 0.940 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.254 0.746 25 H 0.087 0.913 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.715 -2.756 1.763 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.211 4.211 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.176 1.176 6 H -0.187 1.187 7 C -0.635 4.635 8 H 0.051 0.949 9 C -0.003 4.003 10 H 0.052 0.948 11 C -0.150 4.150 12 C 0.006 3.994 13 N -0.168 5.168 14 N -0.174 5.174 15 C -0.112 4.112 16 N -0.307 5.307 17 C 0.002 3.998 18 C -0.087 4.087 19 H 0.066 0.934 20 H 0.079 0.921 21 H 0.119 0.881 22 H 0.119 0.881 23 H 0.131 0.869 24 H 0.269 0.731 25 H 0.105 0.895 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.054 -1.374 1.821 12.268 hybrid contribution -0.543 -1.840 -0.179 1.927 sum 11.511 -3.214 1.642 12.063 Atomic orbital electron populations 1.70983 1.08280 1.30431 1.47200 1.26970 0.96005 1.05861 0.92284 0.83678 0.75053 0.72538 0.79157 1.21617 1.17596 1.18706 1.22017 0.96707 0.95227 1.49584 0.94857 1.19090 0.96085 0.94715 0.90434 0.94792 1.21860 0.91230 0.98087 1.03789 1.22221 0.97552 0.99203 0.80468 1.50518 1.09223 1.37272 1.19811 1.77774 1.05162 1.26443 1.08070 1.26817 0.93854 0.93433 0.97136 1.70335 1.08642 1.30172 1.21540 1.24833 0.96045 0.90332 0.88547 1.21102 0.85050 1.03216 0.99320 0.93408 0.92134 0.88084 0.88146 0.86942 0.73069 0.89539 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.70 21.45 0.29 -55.23 15 2 C -0.01 -0.61 5.34 84.65 0.45 -0.16 15 3 Si 1.07 47.49 26.56 68.60 1.82 49.31 15 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 5 H -0.25 -10.21 5.43 99.48 0.54 -9.67 15 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 7 C -0.60 -30.71 8.78 25.60 0.22 -30.49 15 8 H 0.03 1.86 7.99 -2.91 -0.02 1.83 15 9 C 0.02 0.69 1.70 -11.34 -0.02 0.67 15 10 H 0.03 1.40 6.76 -2.39 -0.02 1.39 15 11 C -0.11 -3.71 5.19 30.75 0.16 -3.55 15 12 C 0.13 3.60 7.30 86.52 0.63 4.23 15 13 N -0.38 -13.24 4.04 -338.30 -1.37 -14.61 15 14 N -0.35 -11.70 12.74 -60.96 -0.78 -12.48 15 15 C 0.19 5.95 13.04 180.62 2.35 8.30 15 16 N -0.58 -21.99 11.18 -191.33 -2.14 -24.13 15 17 C 0.28 10.86 7.72 138.36 1.07 11.92 15 18 C -0.05 -1.95 5.26 30.07 0.16 -1.79 15 19 H 0.26 15.37 8.73 -92.71 -0.81 14.56 15 20 H 0.06 2.07 8.12 -2.39 -0.02 2.05 15 21 H 0.10 3.11 8.12 -2.39 -0.02 3.09 15 22 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.11 2.62 8.14 -2.38 -0.02 2.61 15 24 H 0.25 5.21 8.06 -2.91 -0.02 5.19 15 25 H 0.09 3.73 5.00 -2.39 -0.01 3.72 15 26 H 0.08 3.60 8.11 -2.39 -0.02 3.58 15 Total: -1.00 -63.38 219.35 3.84 -59.54 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.97 Total: 8.45 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.03 Total: -10.85 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.99 Total: -106.44 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.82 Total: 49.31 kcal Total: -63.38 3.84 -59.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059464.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.157 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds