Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47255 * 239.99969 * 3 2 1 5 5 H 1.48502 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47473 * 119.99765 * 3 2 1 7 7 C 1.37876 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50521 * 59.90947 * 9 7 2 11 11 C 1.53157 * 109.50745 * 180.02562 * 9 7 2 12 12 C 1.53297 * 109.49248 * 189.11313 * 11 9 7 13 13 N 1.46297 * 108.77583 * 309.88087 * 12 11 9 14 14 N 1.39764 * 128.31491 * 197.04143 * 13 12 11 15 15 C 1.30967 * 106.58571 * 179.90871 * 14 13 12 16 16 N 1.33474 * 109.00515 * 0.02562 * 15 14 13 17 17 C 1.30330 * 109.72386 * 0.02831 * 16 15 14 18 18 C 1.50935 * 127.90031 * 179.88531 * 17 16 15 19 19 H 0.97004 * 120.00251 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47001 * 69.10256 * 11 9 7 21 21 H 1.09000 * 109.46626 * 309.11940 * 11 9 7 22 22 H 1.09000 * 109.59014 * 190.08813 * 12 11 9 23 23 H 1.09003 * 109.58883 * 69.66562 * 12 11 9 24 24 H 1.08003 * 125.49995 * 180.02562 * 15 14 13 25 25 H 1.09005 * 109.71503 * 76.32536 * 18 17 16 26 26 H 1.09002 * 109.75334 * 315.70049 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6232 -2.5570 -0.8887 11 6 2.2454 -3.6639 0.0018 12 6 1.4926 -4.9796 -0.2271 13 7 0.3664 -5.0458 0.7044 14 7 -0.3823 -6.1645 1.0805 15 6 -1.2815 -5.7427 1.9342 16 7 -1.1330 -4.4276 2.1077 17 6 -0.1465 -3.9958 1.3736 18 6 0.3714 -2.5830 1.2546 19 1 -0.4851 0.8401 -0.0004 20 1 2.7594 -3.7018 0.9624 21 1 2.9750 -3.5195 -0.7950 22 1 2.1635 -5.8202 -0.0497 23 1 1.1220 -5.0151 -1.2515 24 1 -2.0236 -6.3594 2.4195 25 1 0.9628 -2.3328 2.1354 26 1 -0.4653 -1.8903 1.1646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059465.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = 73.237820 kcal Electronic energy + Delta-G solvation = -11968.857527 eV Core-core repulsion = 9855.766575 eV Total energy + Delta-G solvation = -2113.090952 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.57079 -36.41537 -33.25294 -31.68428 -29.85326 -28.58106 -25.40570 -23.20866 -21.66732 -20.83626 -18.41209 -16.56180 -16.00664 -15.38330 -14.66053 -14.32163 -13.53368 -13.23821 -12.99593 -12.30124 -12.03353 -11.35236 -11.23744 -10.99831 -10.74203 -10.52774 -10.03988 -9.54088 -9.35317 -9.20593 -9.03661 -8.76513 -8.48758 -6.16731 -4.24798 2.30033 2.97745 3.24951 3.31299 3.32398 3.59761 4.31165 4.86467 5.04584 5.20100 5.39016 5.59676 5.64060 5.88881 6.20396 6.30812 6.61008 6.69287 6.85653 7.04047 7.06076 7.36836 7.49282 7.65971 7.84088 8.15515 8.77418 8.81247 9.42390 10.90696 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.066907 B = 0.010866 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.389306 B = 2576.337044 C = 2882.297677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.045 3.955 10 H 0.035 0.965 11 C -0.129 4.129 12 C 0.129 3.871 13 N -0.379 5.379 14 N -0.346 5.346 15 C 0.183 3.817 16 N -0.561 5.561 17 C 0.302 3.698 18 C -0.037 4.037 19 H 0.266 0.734 20 H 0.062 0.938 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.208 0.792 25 H 0.079 0.921 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -5.759 0.554 6.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.026 3.974 10 H 0.053 0.947 11 C -0.167 4.167 12 C 0.007 3.993 13 N -0.169 5.169 14 N -0.174 5.174 15 C -0.120 4.120 16 N -0.290 5.290 17 C 0.027 3.973 18 C -0.077 4.077 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.224 0.776 25 H 0.098 0.902 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.830 -6.210 0.466 6.491 hybrid contribution 0.432 0.843 -0.062 0.949 sum 2.262 -5.367 0.404 5.838 Atomic orbital electron populations 1.69849 1.05974 1.27285 1.49282 1.25011 0.94905 0.99421 0.94459 0.86570 0.79548 0.82706 0.78700 1.20204 1.21190 1.20108 1.20982 0.92997 0.89707 1.52323 0.92021 1.18824 0.92423 0.92525 0.93594 0.94667 1.22143 0.99340 0.92678 1.02536 1.21971 0.85139 1.00746 0.91415 1.50280 1.26495 1.05324 1.34848 1.77731 1.10069 1.09462 1.20186 1.25920 0.98200 0.91468 0.96374 1.70371 1.20344 1.10637 1.27600 1.25482 0.89420 0.94460 0.87980 1.20913 1.02170 0.83628 1.00968 0.92421 0.91894 0.89756 0.90185 0.90282 0.77559 0.90249 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 11.50 55.43 0.64 -23.21 15 2 C 0.07 1.67 5.31 -17.82 -0.09 1.58 15 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 15 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.52 -13.01 8.53 -34.44 -0.29 -13.30 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.05 1.03 2.12 -91.48 -0.19 0.84 15 10 H 0.04 0.88 8.12 -51.93 -0.42 0.46 15 11 C -0.13 -2.35 5.19 -26.50 -0.14 -2.48 15 12 C 0.13 2.20 7.30 -4.00 -0.03 2.18 15 13 N -0.38 -7.70 4.04 -58.29 -0.24 -7.94 15 14 N -0.35 -6.88 12.74 29.38 0.37 -6.51 15 15 C 0.18 3.44 13.04 -91.39 -1.19 2.25 15 16 N -0.56 -12.18 11.18 -11.83 -0.13 -12.31 15 17 C 0.30 6.64 7.72 -155.78 -1.20 5.44 15 18 C -0.04 -0.84 5.21 -27.56 -0.14 -0.99 15 19 H 0.27 6.88 8.31 -40.82 -0.34 6.55 15 20 H 0.06 1.14 8.12 -51.93 -0.42 0.71 15 21 H 0.08 1.40 8.12 -51.93 -0.42 0.98 15 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.21 2.86 8.06 -52.48 -0.42 2.44 15 25 H 0.08 1.80 8.11 -51.93 -0.42 1.38 15 26 H 0.12 3.09 6.52 -51.93 -0.34 2.75 15 LS Contribution 224.11 15.07 3.38 3.38 Total: -1.00 -28.44 224.11 -7.12 -35.56 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -2.83 Total: 0.60 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.29 Total: -4.50 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.64 Total: -49.96 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.44 -7.12 -35.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059465.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.795 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds