Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47255 * 239.99969 * 3 2 1 5 5 H 1.48502 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47473 * 119.99765 * 3 2 1 7 7 C 1.37876 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50521 * 59.90947 * 9 7 2 11 11 C 1.53157 * 109.50745 * 180.02562 * 9 7 2 12 12 C 1.53297 * 109.49248 * 189.11313 * 11 9 7 13 13 N 1.46297 * 108.77583 * 309.88087 * 12 11 9 14 14 N 1.39764 * 128.31491 * 197.04143 * 13 12 11 15 15 C 1.30967 * 106.58571 * 179.90871 * 14 13 12 16 16 N 1.33474 * 109.00515 * 0.02562 * 15 14 13 17 17 C 1.30330 * 109.72386 * 0.02831 * 16 15 14 18 18 C 1.50935 * 127.90031 * 179.88531 * 17 16 15 19 19 H 0.97004 * 120.00251 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47001 * 69.10256 * 11 9 7 21 21 H 1.09000 * 109.46626 * 309.11940 * 11 9 7 22 22 H 1.09000 * 109.59014 * 190.08813 * 12 11 9 23 23 H 1.09003 * 109.58883 * 69.66562 * 12 11 9 24 24 H 1.08003 * 125.49995 * 180.02562 * 15 14 13 25 25 H 1.09005 * 109.71503 * 76.32536 * 18 17 16 26 26 H 1.09002 * 109.75334 * 315.70049 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6232 -2.5570 -0.8887 11 6 2.2454 -3.6639 0.0018 12 6 1.4926 -4.9796 -0.2271 13 7 0.3664 -5.0458 0.7044 14 7 -0.3823 -6.1645 1.0805 15 6 -1.2815 -5.7427 1.9342 16 7 -1.1330 -4.4276 2.1077 17 6 -0.1465 -3.9958 1.3736 18 6 0.3714 -2.5830 1.2546 19 1 -0.4851 0.8401 -0.0004 20 1 2.7594 -3.7018 0.9624 21 1 2.9750 -3.5195 -0.7950 22 1 2.1635 -5.8202 -0.0497 23 1 1.1220 -5.0151 -1.2515 24 1 -2.0236 -6.3594 2.4195 25 1 0.9628 -2.3328 2.1354 26 1 -0.4653 -1.8903 1.1646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059465.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = 57.170968 kcal Electronic energy + Delta-G solvation = -11969.554238 eV Core-core repulsion = 9855.766575 eV Total energy + Delta-G solvation = -2113.787663 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.14904 -38.05976 -35.00034 -33.43283 -31.48637 -30.20132 -27.27742 -24.79363 -23.26399 -22.48458 -20.05091 -18.45028 -17.57401 -16.97342 -16.47268 -15.80116 -15.16254 -14.89067 -14.67119 -13.97382 -13.70806 -12.96854 -12.87789 -12.72913 -12.52547 -12.29795 -11.73189 -11.26318 -11.03411 -10.96927 -10.65813 -10.51132 -10.25543 -8.11729 -6.25760 0.70423 1.48454 1.49827 1.50090 1.57331 2.02215 2.45828 3.13716 3.43416 3.59545 4.00032 4.12216 4.23947 4.39727 4.67279 4.69440 4.91450 5.06016 5.21603 5.43253 5.56354 5.59529 5.66883 5.87873 5.99820 6.25173 6.84870 7.22647 7.44855 8.94664 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.066907 B = 0.010866 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.389306 B = 2576.337044 C = 2882.297677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.043 3.957 10 H 0.006 0.994 11 C -0.117 4.117 12 C 0.126 3.874 13 N -0.379 5.379 14 N -0.351 5.351 15 C 0.186 3.814 16 N -0.584 5.584 17 C 0.282 3.718 18 C -0.024 4.024 19 H 0.263 0.737 20 H 0.066 0.934 21 H 0.104 0.896 22 H 0.113 0.887 23 H 0.089 0.911 24 H 0.252 0.748 25 H 0.074 0.926 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -6.759 0.532 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.024 3.976 10 H 0.024 0.976 11 C -0.156 4.156 12 C 0.006 3.994 13 N -0.170 5.170 14 N -0.180 5.180 15 C -0.116 4.116 16 N -0.313 5.313 17 C 0.007 3.993 18 C -0.064 4.064 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.123 0.877 22 H 0.131 0.869 23 H 0.108 0.892 24 H 0.268 0.732 25 H 0.092 0.908 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.897 -7.226 0.432 7.797 hybrid contribution 0.075 1.101 -0.055 1.105 sum 2.972 -6.125 0.377 6.818 Atomic orbital electron populations 1.69999 1.07385 1.27679 1.50611 1.25774 0.95543 1.02655 0.94404 0.85617 0.78270 0.78851 0.78964 1.19456 1.21653 1.19464 1.21393 0.93546 0.90723 1.51320 0.91270 1.18758 0.92875 0.93880 0.92074 0.97626 1.22003 0.98536 0.91452 1.03585 1.22197 0.84788 1.01080 0.91379 1.50518 1.26901 1.04905 1.34695 1.77716 1.10386 1.09299 1.20567 1.26787 0.98414 0.90694 0.95681 1.70342 1.20541 1.12335 1.28106 1.25171 0.90428 0.94396 0.89349 1.20551 1.00949 0.84057 1.00883 0.92790 0.91494 0.87726 0.86907 0.89233 0.73213 0.90800 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 11.50 21.45 0.25 -50.35 15 2 C 0.02 0.82 5.31 84.65 0.45 1.27 15 3 Si 0.96 40.83 29.54 68.60 2.03 42.86 15 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 5 H -0.29 -12.50 7.11 99.48 0.71 -11.80 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 7 C -0.53 -26.38 8.53 25.60 0.22 -26.16 15 8 H 0.07 3.25 7.74 -2.91 -0.02 3.23 15 9 C 0.04 1.97 2.12 -11.35 -0.02 1.95 15 10 H 0.01 0.29 8.12 -2.39 -0.02 0.27 15 11 C -0.12 -4.07 5.19 30.75 0.16 -3.91 15 12 C 0.13 3.99 7.30 86.52 0.63 4.62 15 13 N -0.38 -14.79 4.04 -338.34 -1.37 -16.16 15 14 N -0.35 -13.15 12.74 -60.96 -0.78 -13.92 15 15 C 0.19 6.57 13.04 180.62 2.35 8.93 15 16 N -0.58 -24.91 11.18 -191.33 -2.14 -27.05 15 17 C 0.28 12.34 7.72 138.37 1.07 13.41 15 18 C -0.02 -1.13 5.21 30.06 0.16 -0.97 15 19 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 20 H 0.07 2.27 8.12 -2.38 -0.02 2.26 15 21 H 0.10 3.20 8.12 -2.39 -0.02 3.18 15 22 H 0.11 2.88 8.14 -2.39 -0.02 2.86 15 23 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.25 6.08 8.06 -2.91 -0.02 6.05 15 25 H 0.07 3.44 8.11 -2.38 -0.02 3.42 15 26 H 0.09 4.71 6.52 -2.39 -0.02 4.69 15 Total: -1.00 -60.50 224.11 4.18 -56.33 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.17 Total: 9.16 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.01 Total: -0.87 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -4.04 Total: -107.48 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -60.50 4.18 -56.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059465.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.497 kcal (2) G-P(sol) polarization free energy of solvation -60.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds