Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30304 * 126.89032 * 2 1 4 4 O 1.21001 * 111.56634 * 180.02562 * 3 2 1 5 5 C 1.34142 * 111.52535 * 0.02562 * 4 3 2 6 6 C 1.35036 * 106.28258 * 359.96938 * 5 4 3 7 7 C 1.50677 * 110.64723 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.33843 * 135.55002 * 7 6 5 9 9 C 1.50698 * 110.43503 * 257.76835 * 7 6 5 10 10 H 1.08001 * 120.00122 * 23.02605 * 9 7 6 11 11 C 1.37880 * 119.99650 * 203.02910 * 9 7 6 12 12 N 1.31513 * 119.99570 * 185.03351 * 11 9 7 13 13 Si 1.86797 * 120.00264 * 5.02544 * 11 9 7 14 14 H 1.48495 * 109.47022 * 84.80942 * 13 11 9 15 15 H 1.48502 * 109.47189 * 204.80786 * 13 11 9 16 16 H 1.48503 * 109.47342 * 324.80764 * 13 11 9 17 17 C 1.54571 * 104.96090 * 16.68805 * 7 6 5 18 18 C 1.51103 * 143.60239 * 179.97438 * 5 4 3 19 19 H 1.09001 * 109.47466 * 94.98804 * 1 2 3 20 20 H 1.09006 * 109.46939 * 214.98582 * 1 2 3 21 21 H 1.08999 * 109.47020 * 334.98621 * 1 2 3 22 22 H 0.97000 * 119.99521 * 179.97438 * 12 11 9 23 23 H 1.08994 * 110.93299 * 92.83298 * 17 7 6 24 24 H 1.08996 * 110.92952 * 216.51036 * 17 7 6 25 25 H 1.09001 * 110.32096 * 44.38212 * 18 5 4 26 26 H 1.08998 * 110.40457 * 282.22284 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2892 1.0422 0.0000 4 8 3.4562 0.7224 -0.0005 5 6 3.6011 -0.6112 -0.0015 6 6 2.3533 -1.1276 -0.0008 7 6 2.4016 -2.6336 -0.0012 8 1 1.6850 -3.0358 0.7149 9 6 2.1187 -3.1688 -1.3813 10 1 2.2849 -2.5448 -2.2470 11 6 1.6474 -4.4550 -1.5386 12 7 1.4945 -4.9562 -2.7448 13 14 1.2266 -5.4856 -0.0386 14 1 -0.1588 -5.1793 0.3995 15 1 1.3297 -6.9264 -0.3832 16 1 2.1744 -5.1704 1.0604 17 6 3.8444 -2.9867 0.4267 18 6 4.6238 -1.7235 -0.0029 19 1 -0.3634 -0.0894 -1.0238 20 1 -0.3633 -0.8420 0.5893 21 1 -0.3633 0.9313 0.4345 22 1 1.1633 -5.8612 -2.8555 23 1 3.9057 -3.1342 1.5048 24 1 4.2043 -3.8665 -0.1066 25 1 5.4183 -1.5081 0.7116 26 1 5.0396 -1.8562 -1.0017 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = 65.472402 kcal Electronic energy + Delta-G solvation = -12031.300268 eV Core-core repulsion = 9885.579832 eV Total energy + Delta-G solvation = -2145.720437 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.20466 -37.22500 -33.63579 -32.48599 -29.15092 -28.13697 -27.90930 -23.82501 -22.09715 -19.70599 -19.24100 -17.27057 -16.61639 -16.09378 -14.42337 -14.00334 -13.60299 -12.88719 -12.77387 -12.63191 -12.25685 -12.04681 -11.49055 -11.17797 -10.93714 -10.55825 -10.35186 -10.04258 -9.99145 -9.49425 -9.09261 -8.66075 -8.05243 -6.17545 -4.18222 2.17455 3.03842 3.21719 3.30502 3.31556 3.35572 4.32429 4.87728 5.09692 5.30369 5.33786 5.66349 5.78601 5.90316 5.98297 6.13497 6.20589 6.43142 6.51100 6.61352 6.61926 6.83145 6.93774 7.15406 7.59539 8.41389 8.87288 8.94222 9.42899 10.95120 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.042234 B = 0.014174 C = 0.012453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.810360 B = 1974.905507 C = 2247.845222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.033 3.967 3 N -0.383 5.383 4 O 0.098 5.902 5 C -0.088 4.088 6 C -0.171 4.171 7 C 0.082 3.918 8 H 0.042 0.958 9 C -0.506 4.506 10 H 0.073 0.927 11 C 0.075 3.925 12 N -0.895 5.895 13 Si 0.873 3.127 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.261 1.261 17 C -0.119 4.119 18 C -0.009 4.009 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.266 0.734 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 4.006 6.891 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.124 4.124 3 N -0.091 5.091 4 O 0.033 5.967 5 C -0.152 4.152 6 C -0.175 4.175 7 C 0.063 3.937 8 H 0.060 0.940 9 C -0.543 4.543 10 H 0.091 0.909 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.700 3.300 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.157 4.157 18 C -0.047 4.047 19 H 0.098 0.902 20 H 0.097 0.903 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.035 5.151 6.774 8.750 hybrid contribution -0.424 -1.287 0.532 1.456 sum 1.611 3.864 7.306 8.420 Atomic orbital electron populations 1.20061 0.86586 1.02455 1.03402 1.22721 0.98303 0.88493 1.02918 1.73929 0.89096 1.23524 1.22592 1.84515 1.21453 1.21657 1.69026 1.25246 1.00734 0.83643 1.05563 1.22188 0.91952 0.99375 1.03958 1.18088 0.93092 0.84285 0.98275 0.94043 1.20754 1.44589 0.98550 0.90450 0.90875 1.25002 0.94712 0.97333 0.95710 1.69894 1.45579 1.16253 1.21448 0.86912 0.79701 0.79530 0.83839 1.20060 1.21335 1.18582 1.22891 0.97544 0.96218 0.99067 1.20560 0.93801 0.87656 1.02718 0.90218 0.90277 0.91659 0.92424 0.92873 0.89514 0.91166 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.47 36.00 0.38 -0.77 15 2 C 0.03 0.68 7.33 -82.20 -0.60 0.08 15 3 N -0.38 -8.01 12.08 33.41 0.40 -7.61 15 4 O 0.10 1.99 11.21 16.89 0.19 2.18 15 5 C -0.09 -1.79 8.39 -35.25 -0.30 -2.08 15 6 C -0.17 -3.77 6.39 -104.73 -0.67 -4.43 15 7 C 0.08 1.88 2.27 -92.11 -0.21 1.67 15 8 H 0.04 0.95 5.97 -51.93 -0.31 0.64 15 9 C -0.51 -13.63 8.81 -34.44 -0.30 -13.93 15 10 H 0.07 2.21 8.06 -52.49 -0.42 1.79 15 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 12 N -0.89 -26.27 13.96 55.43 0.77 -25.49 15 13 Si 0.87 20.22 26.81 -169.99 -4.56 15.66 15 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.26 -5.65 6.70 56.52 0.38 -5.27 15 17 C -0.12 -2.30 6.12 -25.11 -0.15 -2.45 15 18 C -0.01 -0.16 6.77 -26.89 -0.18 -0.34 15 19 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 20 H 0.08 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.09 1.70 7.89 -51.93 -0.41 1.29 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.09 1.54 8.14 -51.93 -0.42 1.12 15 LS Contribution 226.07 15.07 3.41 3.41 Total: -1.00 -29.70 226.07 -4.76 -34.45 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -2.84 Total: -2.29 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.14 Total: -20.31 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 1.18 Total: -33.10 kcal Atomic # 8 Polarization: 1.99 SS G_CDS: 0.19 Total: 2.18 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.56 Total: 15.66 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.70 -4.76 -34.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.927 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds