Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00516 * 2 1 4 4 H 1.48493 * 109.47413 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46993 * 300.00463 * 3 2 1 6 6 H 1.48505 * 109.46871 * 60.00103 * 3 2 1 7 7 C 1.37875 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00178 * 173.31315 * 7 2 1 9 9 C 1.50706 * 120.00094 * 353.31173 * 7 2 1 10 10 H 1.09006 * 109.59175 * 328.50097 * 9 7 2 11 11 C 1.53312 * 109.59310 * 88.79927 * 9 7 2 12 12 C 1.53144 * 109.57762 * 170.07268 * 11 9 7 13 13 C 1.53470 * 109.30450 * 290.57114 * 12 11 9 14 14 C 1.50795 * 108.13333 * 48.72037 * 13 12 11 15 15 N 1.29842 * 128.52667 * 164.09336 * 14 13 12 16 16 N 1.28909 * 109.47831 * 180.11069 * 15 14 13 17 17 C 1.30835 * 109.74182 * 359.96528 * 16 15 14 18 18 N 1.34497 * 107.14032 * 0.08401 * 17 16 15 19 19 H 0.97000 * 120.00554 * 174.56852 * 1 2 3 20 20 H 1.08996 * 109.45824 * 290.10970 * 11 9 7 21 21 H 1.08999 * 109.45313 * 50.04258 * 11 9 7 22 22 H 1.08994 * 109.50429 * 50.52386 * 12 11 9 23 23 H 1.09004 * 109.49683 * 170.62386 * 12 11 9 24 24 H 1.09007 * 109.72501 * 168.37901 * 13 12 11 25 25 H 1.08998 * 109.72981 * 289.01318 * 13 12 11 26 26 H 1.08004 * 126.46621 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0789 -1.1972 -0.1094 9 6 1.2586 -2.4948 0.1509 10 1 0.3761 -2.3400 0.7717 11 6 0.8324 -3.0068 -1.2299 12 6 0.2978 -4.4365 -1.1046 13 6 1.4572 -5.3839 -0.7675 14 6 2.2352 -4.7848 0.3769 15 7 3.1012 -5.3600 1.1549 16 7 3.5424 -4.5052 2.0131 17 6 2.9721 -3.3446 1.8142 18 7 2.1295 -3.4897 0.7759 19 1 -0.4851 -0.8362 -0.0795 20 1 0.0514 -2.3611 -1.6314 21 1 1.6910 -2.9979 -1.9013 22 1 -0.4482 -4.4778 -0.3111 23 1 -0.1567 -4.7389 -2.0480 24 1 1.0636 -6.3575 -0.4752 25 1 2.1061 -5.4950 -1.6362 26 1 3.1436 -2.4399 2.3786 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059964.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = 39.743084 kcal Electronic energy + Delta-G solvation = -12146.810604 eV Core-core repulsion = 10032.267211 eV Total energy + Delta-G solvation = -2114.543393 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.10085 -38.44003 -35.37900 -34.11216 -31.55590 -29.93807 -27.18009 -24.59363 -23.69035 -22.95541 -20.40374 -19.46505 -17.98701 -16.93780 -15.97059 -15.73046 -15.45332 -15.27745 -14.79423 -14.52071 -13.74922 -13.13750 -12.74182 -12.46068 -12.40772 -12.01538 -11.98058 -11.96542 -11.51520 -11.30503 -10.63960 -10.58449 -10.06771 -8.82281 -6.62776 1.04631 1.54374 1.56754 1.76942 1.87554 1.92815 2.45313 2.99804 3.37355 3.69910 3.95533 3.95877 4.05853 4.35339 4.51176 4.54960 4.76008 4.84057 4.95257 5.00499 5.17502 5.27780 5.41532 5.70761 5.87348 6.20099 6.37141 7.15614 7.77594 8.55643 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.044879 B = 0.013783 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.750126 B = 2031.071686 C = 2495.577005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.002 4.002 3 Si 1.116 2.884 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.623 4.623 8 H 0.048 0.952 9 C 0.240 3.760 10 H 0.037 0.963 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.025 4.025 14 C 0.154 3.846 15 N -0.338 5.338 16 N -0.350 5.350 17 C 0.161 3.839 18 N -0.447 5.447 19 H 0.267 0.733 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -3.916 -3.396 5.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.205 4.205 3 Si 0.938 3.062 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.661 4.661 8 H 0.067 0.933 9 C 0.139 3.861 10 H 0.055 0.945 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.065 4.065 14 C -0.116 4.116 15 N -0.179 5.179 16 N -0.191 5.191 17 C -0.129 4.129 18 N -0.134 5.134 19 H 0.078 0.922 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.129 0.871 24 H 0.134 0.866 25 H 0.122 0.878 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.036 -3.307 -2.714 4.278 hybrid contribution -0.560 -0.383 -0.311 0.746 sum -0.596 -3.690 -3.024 4.808 Atomic orbital electron populations 1.70872 1.07613 1.30956 1.45332 1.27088 0.96264 1.05673 0.91471 0.82901 0.74050 0.71357 0.77877 1.20290 1.20247 1.20101 1.22159 0.95068 0.91739 1.57117 0.93317 1.19548 0.88805 0.85920 0.91815 0.94526 1.21971 1.00836 0.96563 0.96207 1.21772 0.96843 0.93274 1.03835 1.20370 0.95187 0.99255 0.91638 1.25590 1.00777 0.83419 1.01769 1.73774 1.12579 1.26032 1.05491 1.74274 1.24530 0.99047 1.21281 1.26289 0.93061 1.00578 0.92923 1.46936 1.31564 1.10862 1.24068 0.92246 0.91098 0.92398 0.92092 0.87085 0.86635 0.87755 0.75992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.40 13.55 21.45 0.29 -48.11 15 2 C 0.00 -0.11 5.45 84.65 0.46 0.35 15 3 Si 1.12 45.21 29.91 68.60 2.05 47.26 15 4 H -0.28 -10.79 7.11 99.48 0.71 -10.09 15 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 15 6 H -0.28 -10.87 7.11 99.48 0.71 -10.17 15 7 C -0.62 -31.04 8.01 25.60 0.21 -30.83 15 8 H 0.05 2.54 7.82 -2.91 -0.02 2.51 15 9 C 0.24 10.78 2.63 44.40 0.12 10.90 15 10 H 0.04 1.80 6.99 -2.38 -0.02 1.78 15 11 C -0.12 -4.41 5.18 30.75 0.16 -4.25 15 12 C -0.12 -3.38 5.96 30.80 0.18 -3.20 15 13 C -0.03 -0.73 6.34 30.04 0.19 -0.54 15 14 C 0.15 6.18 7.75 138.07 1.07 7.25 15 15 N -0.34 -15.05 12.21 -50.16 -0.61 -15.66 15 16 N -0.35 -16.05 12.23 -60.43 -0.74 -16.79 15 17 C 0.16 7.04 12.16 180.34 2.19 9.23 15 18 N -0.45 -19.53 2.95 -500.85 -1.48 -21.01 15 19 H 0.27 13.95 6.35 -92.71 -0.59 13.36 15 20 H 0.07 2.76 7.63 -2.39 -0.02 2.74 15 21 H 0.06 2.23 8.09 -2.39 -0.02 2.21 15 22 H 0.06 1.77 8.12 -2.39 -0.02 1.75 15 23 H 0.11 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.12 2.75 8.14 -2.38 -0.02 2.74 15 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.22 8.69 8.06 -2.91 -0.02 8.67 15 Total: -1.00 -60.51 223.14 5.44 -55.06 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.35 Total: 10.33 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.58 Total: -11.09 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -2.54 Total: -101.57 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.05 Total: 47.26 kcal Total: -60.51 5.44 -55.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059964.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.806 kcal (2) G-P(sol) polarization free energy of solvation -60.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds