Wall clock time and date at job start Mon Mar 30 2020 02:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47293 * 240.00061 * 3 2 1 5 5 H 1.48506 * 109.46726 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47351 * 119.99717 * 3 2 1 7 7 C 1.37878 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99971 * 185.21199 * 7 2 1 9 9 C 1.50696 * 119.99923 * 5.21059 * 7 2 1 10 10 H 1.09005 * 109.59205 * 24.56802 * 9 7 2 11 11 C 1.53318 * 109.59694 * 264.11025 * 9 7 2 12 12 C 1.53163 * 109.62326 * 189.94294 * 11 9 7 13 13 C 1.53470 * 109.29313 * 69.36952 * 12 11 9 14 14 C 1.50800 * 108.16648 * 311.35322 * 13 12 11 15 15 N 1.29842 * 128.52164 * 195.87705 * 14 13 12 16 16 N 1.28903 * 109.48067 * 179.90452 * 15 14 13 17 17 C 1.30840 * 109.73905 * 0.02562 * 16 15 14 18 18 N 1.34695 * 107.07127 * 0.03998 * 17 16 15 19 19 H 0.96997 * 120.00224 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.44931 * 309.97000 * 11 9 7 21 21 H 1.09001 * 109.45047 * 69.91632 * 11 9 7 22 22 H 1.09000 * 109.47537 * 309.44274 * 12 11 9 23 23 H 1.09004 * 109.54125 * 189.33211 * 12 11 9 24 24 H 1.09000 * 109.72812 * 191.67292 * 13 12 11 25 25 H 1.09000 * 109.72844 * 71.03443 * 13 12 11 26 26 H 1.07998 * 126.46273 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0855 9 6 1.2558 -2.4965 -0.1174 10 1 0.3006 -2.3253 -0.6139 11 6 1.0154 -3.0798 1.2799 12 6 0.4808 -4.5097 1.1555 13 6 1.5943 -5.4230 0.6252 14 6 2.2135 -4.7590 -0.5789 15 7 2.9766 -5.2840 -1.4888 16 7 3.2969 -4.3832 -2.3534 17 6 2.7477 -3.2416 -2.0263 18 7 2.0486 -3.4493 -0.8938 19 1 -0.4850 0.8400 -0.0004 20 1 1.9534 -3.0905 1.8351 21 1 0.2873 -2.4653 1.8094 22 1 -0.3616 -4.5238 0.4638 23 1 0.1550 -4.8636 2.1336 24 1 1.1742 -6.3870 0.3384 25 1 2.3512 -5.5662 1.3963 26 1 2.8387 -2.3086 -2.5625 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059965.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:48 Heat of formation + Delta-G solvation = 42.439702 kcal Electronic energy + Delta-G solvation = -12104.903381 eV Core-core repulsion = 9990.476923 eV Total energy + Delta-G solvation = -2114.426458 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.97745 -38.16934 -35.17330 -33.98611 -31.55841 -30.03099 -27.37934 -24.46353 -23.53340 -22.79571 -20.22137 -18.89981 -17.98740 -16.82793 -16.36131 -15.73322 -15.16262 -14.94138 -14.63296 -14.59739 -13.29170 -13.20757 -12.93025 -12.59696 -12.35373 -12.16626 -11.87168 -11.80842 -11.56362 -11.21362 -10.78628 -10.58689 -9.96779 -8.39049 -6.55867 1.16836 1.39182 1.42682 1.49899 1.97592 2.05012 2.32443 2.98521 3.48114 3.84670 4.07686 4.09560 4.22691 4.58998 4.65268 4.72247 4.88646 4.98476 5.09435 5.22213 5.32022 5.39526 5.53345 5.58684 5.91818 6.26786 6.60296 7.17562 7.88395 8.67585 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.044735 B = 0.013672 C = 0.011234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.752922 B = 2047.524769 C = 2491.896803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.038 3.962 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.246 3.754 10 H 0.054 0.946 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.025 4.025 14 C 0.153 3.847 15 N -0.342 5.342 16 N -0.353 5.353 17 C 0.159 3.841 18 N -0.447 5.447 19 H 0.274 0.726 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.108 0.892 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -3.346 3.758 5.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.166 4.166 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.146 3.854 10 H 0.072 0.928 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.064 4.064 14 C -0.117 4.117 15 N -0.183 5.183 16 N -0.195 5.195 17 C -0.131 4.131 18 N -0.135 5.135 19 H 0.084 0.916 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.127 0.873 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.162 -4.188 3.006 5.158 hybrid contribution -0.331 2.177 0.358 2.231 sum -0.492 -2.011 3.365 3.950 Atomic orbital electron populations 1.69961 1.07234 1.28992 1.47761 1.25649 0.95617 1.02468 0.92856 0.85529 0.78449 0.78190 0.79144 1.19465 1.20315 1.19549 1.21196 0.93549 0.90448 1.53805 0.92715 1.19543 0.90822 0.85726 0.89306 0.92795 1.21875 1.01018 0.95857 0.96205 1.21770 0.96976 0.93869 1.03090 1.20356 0.97776 0.98533 0.89756 1.25503 1.01151 0.83746 1.01254 1.73756 1.15918 1.25518 1.03136 1.74243 1.23972 0.98197 1.23046 1.26283 0.95929 1.00880 0.89975 1.47250 1.35994 1.10335 1.19892 0.91643 0.92629 0.90972 0.92332 0.87328 0.86939 0.87821 0.76192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.24 12.84 21.45 0.28 -45.97 15 2 C 0.04 1.86 5.45 84.66 0.46 2.32 15 3 Si 0.96 39.31 29.54 68.60 2.03 41.33 15 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 15 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 7 C -0.55 -27.24 8.01 25.60 0.21 -27.04 15 8 H 0.05 2.78 7.82 -2.91 -0.02 2.76 15 9 C 0.25 11.17 3.11 44.40 0.14 11.30 15 10 H 0.05 2.74 7.38 -2.38 -0.02 2.72 15 11 C -0.11 -4.22 5.23 30.76 0.16 -4.06 15 12 C -0.12 -3.47 5.96 30.81 0.18 -3.28 15 13 C -0.02 -0.74 6.33 30.04 0.19 -0.55 15 14 C 0.15 6.22 7.75 138.14 1.07 7.29 15 15 N -0.34 -15.40 12.21 -50.28 -0.61 -16.01 15 16 N -0.35 -16.36 12.23 -60.31 -0.74 -17.10 15 17 C 0.16 7.01 12.17 180.27 2.19 9.21 15 18 N -0.45 -19.71 2.95 -500.85 -1.48 -21.18 15 19 H 0.27 13.31 8.31 -92.71 -0.77 12.54 15 20 H 0.05 2.12 8.09 -2.39 -0.02 2.10 15 21 H 0.07 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.06 1.78 8.12 -2.39 -0.02 1.76 15 23 H 0.11 2.38 8.14 -2.38 -0.02 2.36 15 24 H 0.11 2.76 8.14 -2.39 -0.02 2.75 15 25 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.22 8.74 8.06 -2.91 -0.02 8.71 15 Total: -1.00 -58.50 225.45 5.25 -53.25 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.17 Total: 10.48 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.60 Total: -4.80 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -2.55 Total: -100.27 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.33 kcal Total: -58.50 5.25 -53.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059965.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.691 kcal (2) G-P(sol) polarization free energy of solvation -58.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds