Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48500 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47363 * 299.99931 * 3 2 1 6 6 H 1.48500 * 109.47132 * 60.00437 * 3 2 1 7 7 C 1.37875 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00128 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.58808 * 300.00471 * 9 7 2 11 11 C 1.53304 * 109.70076 * 179.64756 * 9 7 2 12 12 C 1.53163 * 109.49345 * 190.03439 * 11 9 7 13 13 C 1.53429 * 109.25009 * 69.17700 * 12 11 9 14 14 C 1.50927 * 108.19634 * 311.28216 * 13 12 11 15 15 N 1.30325 * 127.90452 * 196.03310 * 14 13 12 16 16 C 1.33472 * 109.72725 * 179.90246 * 15 14 13 17 17 N 1.30973 * 109.00155 * 0.02562 * 16 15 14 18 18 N 1.34675 * 124.05031 * 15.97448 * 14 13 12 19 19 H 0.97004 * 119.99696 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46809 * 310.03894 * 11 9 7 21 21 H 1.08999 * 109.46945 * 70.02610 * 11 9 7 22 22 H 1.08996 * 109.50808 * 309.24417 * 12 11 9 23 23 H 1.09001 * 109.54235 * 189.12807 * 12 11 9 24 24 H 1.09001 * 109.71751 * 191.61017 * 13 12 11 25 25 H 1.08997 * 109.71865 * 70.96381 * 13 12 11 26 26 H 1.08003 * 125.49700 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6239 -2.5590 0.8890 11 6 2.2425 -3.6684 -0.0101 12 6 1.4872 -4.9769 -0.2616 13 6 0.9669 -4.9912 -1.7050 14 6 0.2737 -3.6768 -1.9691 15 7 -0.5430 -3.3836 -2.9415 16 6 -0.9453 -2.1162 -2.8252 17 7 -0.3828 -1.5855 -1.7682 18 7 0.4137 -2.5820 -1.1974 19 1 -0.4850 0.8401 0.0004 20 1 2.9772 -3.5153 -0.8006 21 1 2.7507 -3.7216 0.9527 22 1 0.6471 -5.0508 0.4289 23 1 2.1595 -5.8211 -0.1087 24 1 0.2608 -5.8116 -1.8332 25 1 1.8015 -5.1122 -2.3955 26 1 -1.6249 -1.6101 -3.4948 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064951.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 85.899632 kcal Electronic energy + Delta-G solvation = -12292.609078 eV Core-core repulsion = 10180.067183 eV Total energy + Delta-G solvation = -2112.541895 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.85033 -36.11130 -33.28406 -31.17267 -29.31065 -28.64602 -25.37016 -22.46323 -21.75082 -20.27761 -18.25376 -16.77171 -15.37655 -14.67454 -14.57512 -13.95732 -13.66093 -13.30582 -12.84534 -12.15726 -11.49665 -11.39605 -11.02369 -10.95700 -10.55125 -10.50424 -10.22921 -10.05769 -9.26657 -8.98547 -8.25110 -8.18873 -7.96353 -6.11142 -4.31059 3.13447 3.23416 3.31973 3.34324 3.94604 4.17745 4.32242 4.98477 5.24464 5.33308 5.40829 5.60430 5.96755 6.05316 6.15714 6.22453 6.36853 6.43573 6.65756 6.82152 7.19451 7.64951 7.67269 7.90413 8.01189 8.37071 8.75719 9.39234 9.55167 10.88090 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.016025 C = 0.012610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.178032 B = 1746.902192 C = 2219.876019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.077 3.923 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.264 3.736 10 H 0.053 0.947 11 C -0.123 4.123 12 C -0.127 4.127 13 C -0.028 4.028 14 C 0.207 3.793 15 N -0.568 5.568 16 C 0.105 3.895 17 N -0.210 5.210 18 N -0.313 5.313 19 H 0.264 0.736 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -6.217 -0.070 6.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.589 4.589 8 H 0.086 0.914 9 C 0.167 3.833 10 H 0.070 0.930 11 C -0.162 4.162 12 C -0.165 4.165 13 C -0.068 4.068 14 C -0.068 4.068 15 N -0.299 5.299 16 C -0.196 4.196 17 N -0.039 5.039 18 N -0.106 5.106 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.952 -5.552 0.020 5.885 hybrid contribution 0.386 0.920 -0.117 1.004 sum 2.339 -4.632 -0.096 5.190 Atomic orbital electron populations 1.70085 1.05770 1.26837 1.41110 1.25048 0.94836 0.99516 0.94077 0.86467 0.80113 0.83307 0.77702 1.19668 1.20800 1.20774 1.21062 0.93111 0.89308 1.55378 0.91442 1.19323 0.87607 0.94611 0.81763 0.92984 1.21974 0.98529 0.93329 1.02381 1.21758 1.00389 0.98677 0.95690 1.20066 0.98769 0.90633 0.97289 1.24041 0.98409 0.93037 0.91353 1.69917 1.17644 1.16610 1.25695 1.26070 1.03990 0.90647 0.98886 1.78978 1.05999 1.11387 1.07534 1.52329 1.31226 1.05651 1.21428 0.92593 0.91761 0.90545 0.91741 0.91202 0.89824 0.90012 0.79304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.86 10.43 55.43 0.58 -22.28 15 2 C 0.08 2.10 5.08 -17.82 -0.09 2.01 15 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.55 -14.67 8.73 -34.44 -0.30 -14.97 15 8 H 0.07 1.75 7.75 -52.49 -0.41 1.35 15 9 C 0.26 6.43 3.05 -69.03 -0.21 6.22 15 10 H 0.05 1.36 8.14 -51.93 -0.42 0.93 15 11 C -0.12 -2.32 5.21 -26.49 -0.14 -2.46 15 12 C -0.13 -1.98 5.96 -26.42 -0.16 -2.14 15 13 C -0.03 -0.47 6.33 -27.55 -0.17 -0.65 15 14 C 0.21 4.71 7.72 -155.79 -1.20 3.51 15 15 N -0.57 -13.48 11.18 -11.83 -0.13 -13.62 15 16 C 0.11 2.54 13.04 -91.39 -1.19 1.35 15 17 N -0.21 -5.70 9.26 29.38 0.27 -5.43 15 18 N -0.31 -7.96 3.76 -52.95 -0.20 -8.16 15 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 20 H 0.06 1.23 8.09 -51.93 -0.42 0.81 15 21 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 22 H 0.06 1.02 8.12 -51.93 -0.42 0.60 15 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.19 3.81 8.06 -52.48 -0.42 3.39 15 LS Contribution 221.65 15.07 3.34 3.34 Total: -1.00 -31.14 221.65 -7.55 -38.69 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -2.92 Total: -1.40 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.47 Total: -7.12 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.52 Total: -49.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.14 -7.55 -38.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064951.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.586 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds