Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48500 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47363 * 299.99931 * 3 2 1 6 6 H 1.48500 * 109.47132 * 60.00437 * 3 2 1 7 7 C 1.37875 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00128 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.58808 * 300.00471 * 9 7 2 11 11 C 1.53304 * 109.70076 * 179.64756 * 9 7 2 12 12 C 1.53163 * 109.49345 * 190.03439 * 11 9 7 13 13 C 1.53429 * 109.25009 * 69.17700 * 12 11 9 14 14 C 1.50927 * 108.19634 * 311.28216 * 13 12 11 15 15 N 1.30325 * 127.90452 * 196.03310 * 14 13 12 16 16 C 1.33472 * 109.72725 * 179.90246 * 15 14 13 17 17 N 1.30973 * 109.00155 * 0.02562 * 16 15 14 18 18 N 1.34675 * 124.05031 * 15.97448 * 14 13 12 19 19 H 0.97004 * 119.99696 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46809 * 310.03894 * 11 9 7 21 21 H 1.08999 * 109.46945 * 70.02610 * 11 9 7 22 22 H 1.08996 * 109.50808 * 309.24417 * 12 11 9 23 23 H 1.09001 * 109.54235 * 189.12807 * 12 11 9 24 24 H 1.09001 * 109.71751 * 191.61017 * 13 12 11 25 25 H 1.08997 * 109.71865 * 70.96381 * 13 12 11 26 26 H 1.08003 * 125.49700 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6239 -2.5590 0.8890 11 6 2.2425 -3.6684 -0.0101 12 6 1.4872 -4.9769 -0.2616 13 6 0.9669 -4.9912 -1.7050 14 6 0.2737 -3.6768 -1.9691 15 7 -0.5430 -3.3836 -2.9415 16 6 -0.9453 -2.1162 -2.8252 17 7 -0.3828 -1.5855 -1.7682 18 7 0.4137 -2.5820 -1.1974 19 1 -0.4850 0.8401 0.0004 20 1 2.9772 -3.5153 -0.8006 21 1 2.7507 -3.7216 0.9527 22 1 0.6471 -5.0508 0.4289 23 1 2.1595 -5.8211 -0.1087 24 1 0.2608 -5.8116 -1.8332 25 1 1.8015 -5.1122 -2.3955 26 1 -1.6249 -1.6101 -3.4948 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064951.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 67.259102 kcal Electronic energy + Delta-G solvation = -12293.417392 eV Core-core repulsion = 10180.067183 eV Total energy + Delta-G solvation = -2113.350209 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.67033 -37.73212 -35.10728 -33.04071 -31.04772 -30.42349 -27.19146 -24.18698 -23.39534 -22.11549 -19.86397 -18.76411 -17.15017 -16.61748 -16.31935 -15.48119 -15.31646 -14.84309 -14.63891 -13.85470 -13.14808 -13.05393 -12.87719 -12.71326 -12.27929 -12.06065 -11.81343 -11.75274 -11.03781 -10.92215 -10.19462 -10.06654 -9.86135 -8.13720 -6.39259 1.30409 1.37681 1.40332 1.49481 2.16646 2.34064 2.37914 3.20681 3.45731 3.94928 4.04494 4.13918 4.36623 4.58187 4.71890 4.86813 4.99623 5.10977 5.19483 5.25726 5.45237 5.64084 5.81384 6.02723 6.11091 6.48681 6.80596 7.34443 7.69505 8.84799 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.016025 C = 0.012610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.178032 B = 1746.902192 C = 2219.876019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.256 3.744 10 H 0.021 0.979 11 C -0.116 4.116 12 C -0.117 4.117 13 C -0.029 4.029 14 C 0.210 3.790 15 N -0.581 5.581 16 C 0.104 3.896 17 N -0.265 5.265 18 N -0.332 5.332 19 H 0.260 0.740 20 H 0.061 0.939 21 H 0.095 0.905 22 H 0.059 0.941 23 H 0.119 0.881 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -7.775 -0.293 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.609 4.609 8 H 0.086 0.914 9 C 0.159 3.841 10 H 0.039 0.961 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.068 4.068 14 C -0.066 4.066 15 N -0.312 5.312 16 C -0.197 4.197 17 N -0.093 5.093 18 N -0.125 5.125 19 H 0.069 0.931 20 H 0.080 0.920 21 H 0.113 0.887 22 H 0.078 0.922 23 H 0.137 0.863 24 H 0.128 0.872 25 H 0.123 0.877 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.139 -7.116 -0.191 7.780 hybrid contribution -0.011 1.340 -0.079 1.342 sum 3.127 -5.776 -0.270 6.574 Atomic orbital electron populations 1.70231 1.07056 1.27073 1.42631 1.25803 0.95550 1.02659 0.93857 0.85538 0.79273 0.79580 0.77374 1.18763 1.21639 1.19983 1.21418 0.93372 0.90714 1.55359 0.91355 1.19362 0.87860 0.96355 0.80556 0.96082 1.21921 0.97284 0.92785 1.03443 1.21748 1.00766 0.98339 0.94582 1.20435 0.99646 0.88076 0.98650 1.25234 0.97249 0.94246 0.89855 1.70001 1.18444 1.16364 1.26352 1.26684 1.03564 0.91036 0.98430 1.78878 1.07798 1.13474 1.09132 1.52083 1.31927 1.06329 1.22183 0.93076 0.91976 0.88656 0.92203 0.86291 0.87170 0.87735 0.76511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.83 10.43 21.45 0.22 -48.61 15 2 C 0.03 1.66 5.08 84.65 0.43 2.09 15 3 Si 0.96 43.69 29.54 68.60 2.03 45.71 15 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 7 C -0.57 -30.69 8.73 25.60 0.22 -30.46 15 8 H 0.07 3.55 7.75 -2.91 -0.02 3.52 15 9 C 0.26 12.52 3.05 44.38 0.14 12.66 15 10 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 11 C -0.12 -4.09 5.21 30.75 0.16 -3.93 15 12 C -0.12 -3.17 5.96 30.79 0.18 -2.99 15 13 C -0.03 -0.86 6.33 30.06 0.19 -0.67 15 14 C 0.21 9.22 7.72 138.37 1.07 10.29 15 15 N -0.58 -26.89 11.18 -191.34 -2.14 -29.03 15 16 C 0.10 5.03 13.04 180.62 2.35 7.38 15 17 N -0.26 -14.57 9.26 -60.96 -0.56 -15.13 15 18 N -0.33 -16.92 3.76 -321.43 -1.21 -18.13 15 19 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 20 H 0.06 2.22 8.09 -2.39 -0.02 2.20 15 21 H 0.10 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.06 1.71 8.12 -2.39 -0.02 1.69 15 23 H 0.12 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.11 2.78 8.14 -2.39 -0.02 2.77 15 25 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.22 8.65 8.06 -2.91 -0.02 8.62 15 Total: -1.00 -68.48 221.65 4.25 -64.23 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.17 Total: 6.58 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.75 Total: -5.63 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -3.69 Total: -110.89 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.48 4.25 -64.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064951.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.488 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds