Wall clock time and date at job start Mon Mar 30 2020 02:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48494 * 109.47439 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46914 * 299.99874 * 3 2 1 6 6 H 1.48504 * 109.46985 * 59.99235 * 3 2 1 7 7 C 1.39807 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.41405 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.41665 * 126.05894 * 179.97438 * 9 7 2 11 11 C 1.35514 * 107.81029 * 179.97438 * 10 9 7 12 12 N 1.39096 * 126.00264 * 179.97438 * 11 10 9 13 13 C 1.46509 * 119.99688 * 0.02562 * 12 11 10 14 14 C 1.53003 * 117.49638 * 223.74554 * 13 12 11 15 15 C 1.53003 * 117.49610 * 155.08694 * 13 12 11 16 16 N 1.36397 * 108.00305 * 0.02562 * 11 10 9 17 17 H 0.96991 * 125.90750 * 180.02562 * 16 11 10 18 18 N 1.32923 * 126.06336 * 359.97438 * 9 7 2 19 19 H 0.97001 * 119.99594 * 0.02562 * 1 2 3 20 20 H 1.08005 * 126.09086 * 359.73005 * 10 9 7 21 21 H 0.96997 * 120.00739 * 180.02562 * 12 11 10 22 22 H 1.08998 * 115.55029 * 9.41393 * 13 12 11 23 23 H 1.09002 * 117.49788 * 359.97438 * 14 13 12 24 24 H 1.08993 * 117.50082 * 145.01925 * 14 13 12 25 25 H 1.09000 * 117.49326 * 214.97524 * 15 13 12 26 26 H 1.08995 * 117.49798 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7032 1.3465 0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8843 2.3965 1.2124 7 6 2.0082 -1.2108 0.0005 8 1 3.0882 -1.2107 0.0001 9 6 1.3011 -2.4354 0.0005 10 6 1.8760 -3.7301 0.0005 11 6 0.8650 -4.6325 0.0011 12 7 1.0043 -6.0165 0.0008 13 6 2.3401 -6.6182 0.0003 14 6 2.5812 -7.8021 -0.9384 15 6 2.4788 -8.0307 0.5717 16 7 -0.3133 -3.9454 0.0009 17 1 -1.2004 -4.3375 0.0015 18 7 -0.0206 -2.5757 0.0005 19 1 -0.4849 0.8401 -0.0004 20 1 2.9318 -3.9575 -0.0036 21 1 0.2171 -6.5832 0.0009 22 1 3.1672 -5.9268 0.1611 23 1 1.7459 -8.1335 -1.5553 24 1 3.5671 -7.8898 -1.3949 25 1 3.3974 -8.2687 1.1081 26 1 1.5763 -8.5121 0.9483 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261069786.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:28 Heat of formation + Delta-G solvation = 75.772033 kcal Electronic energy + Delta-G solvation = -11393.428813 eV Core-core repulsion = 9280.447753 eV Total energy + Delta-G solvation = -2112.981060 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.97130 -38.47117 -35.41058 -33.77302 -31.64389 -28.47581 -27.53089 -23.18815 -23.08544 -22.18917 -20.31476 -19.22171 -18.04984 -16.93924 -16.39976 -15.60828 -15.04426 -14.87236 -14.44491 -14.08655 -13.12129 -12.98057 -12.69656 -12.61451 -12.48798 -12.34680 -11.72459 -11.36258 -11.22330 -10.29853 -10.24669 -9.51198 -8.29491 -8.03879 -6.34303 1.42605 1.45996 1.62738 1.84405 2.04025 2.36418 2.48313 3.09683 3.23849 3.69765 3.91558 4.12931 4.18126 4.75886 4.81000 4.85104 5.06427 5.17205 5.27407 5.43328 5.51003 5.80092 6.20063 6.33294 6.81236 7.04640 7.16601 7.43660 8.05315 8.70175 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.074894 B = 0.008232 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.773232 B = 3400.435308 C = 3696.320102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.021 3.979 3 Si 0.990 3.010 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.196 3.804 10 C -0.401 4.401 11 C 0.354 3.646 12 N -0.702 5.702 13 C 0.082 3.918 14 C -0.192 4.192 15 C -0.176 4.176 16 N -0.546 5.546 17 H 0.423 0.577 18 N -0.375 5.375 19 H 0.274 0.726 20 H 0.123 0.877 21 H 0.403 0.597 22 H 0.116 0.884 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -11.736 -0.044 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.522 4.522 8 H 0.100 0.900 9 C 0.042 3.958 10 C -0.435 4.435 11 C 0.130 3.870 12 N -0.340 5.340 13 C -0.026 4.026 14 C -0.231 4.231 15 C -0.215 4.215 16 N -0.258 5.258 17 H 0.264 0.736 18 N -0.206 5.206 19 H 0.083 0.917 20 H 0.141 0.859 21 H 0.238 0.762 22 H 0.133 0.867 23 H 0.115 0.885 24 H 0.129 0.871 25 H 0.134 0.866 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.905 -11.039 -0.040 11.415 hybrid contribution 0.091 -0.157 -0.031 0.184 sum 2.996 -11.196 -0.071 11.590 Atomic orbital electron populations 1.70113 1.08750 1.28628 1.37410 1.26823 0.95676 1.04405 0.92454 0.85048 0.79307 0.76223 0.78307 1.17710 1.19544 1.19545 1.19058 0.93982 0.89299 1.49902 0.89954 1.19619 0.90539 0.93571 0.92091 1.20589 0.97337 0.91862 1.33694 1.18051 0.88109 0.83886 0.96910 1.42996 1.07211 0.99561 1.84207 1.21498 0.85309 0.89918 1.05842 1.23544 1.04067 1.02130 0.93339 1.23486 1.04560 0.97229 0.96212 1.46757 1.05187 1.05891 1.68001 0.73587 1.78776 1.14937 0.86472 1.40442 0.91667 0.85876 0.76155 0.86655 0.88499 0.87065 0.86594 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.32 11.93 21.80 0.26 -49.06 15 2 C 0.02 1.20 5.49 85.21 0.47 1.66 15 3 Si 0.99 42.35 29.56 68.60 2.03 44.37 15 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 7 C -0.48 -28.98 9.39 23.43 0.22 -28.76 15 8 H 0.08 4.64 7.84 -2.91 -0.02 4.62 15 9 C 0.20 11.91 6.75 40.60 0.27 12.19 15 10 C -0.40 -20.77 9.98 22.49 0.22 -20.55 15 11 C 0.35 15.77 8.13 130.95 1.06 16.84 15 12 N -0.70 -22.56 5.74 -324.31 -1.86 -24.42 15 13 C 0.08 2.20 6.45 44.99 0.29 2.49 15 14 C -0.19 -3.85 10.46 30.62 0.32 -3.53 15 15 C -0.18 -3.32 10.46 30.62 0.32 -3.00 15 16 N -0.55 -26.26 7.40 -55.30 -0.41 -26.67 15 17 H 0.42 16.82 8.96 -213.36 -1.91 14.91 15 18 N -0.37 -22.64 10.95 -51.91 -0.57 -23.21 15 19 H 0.27 14.97 8.30 -92.71 -0.77 14.20 15 20 H 0.12 5.89 6.95 -2.91 -0.02 5.87 15 21 H 0.40 10.57 8.95 -92.71 -0.83 9.74 15 22 H 0.12 3.45 6.64 -2.39 -0.02 3.43 15 23 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.12 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 Total: -1.00 -73.09 234.23 1.10 -71.98 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -1.53 Total: 29.67 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.18 Total: -22.66 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -2.58 Total: -123.37 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -73.09 1.10 -71.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069786.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.756 kcal (2) G-P(sol) polarization free energy of solvation -73.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds