Wall clock time and date at job start Mon Mar 30 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00228 * 2 1 4 4 H 1.48492 * 109.47290 * 240.00074 * 3 2 1 5 5 H 1.48506 * 109.46735 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47082 * 119.99738 * 3 2 1 7 7 C 1.37878 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99572 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.43288 * 60.06017 * 9 7 2 11 11 C 1.53146 * 109.45231 * 180.02562 * 9 7 2 12 12 C 1.53465 * 109.30409 * 189.47146 * 11 9 7 13 13 C 1.50801 * 108.13283 * 311.28573 * 12 11 9 14 14 N 1.29837 * 128.52530 * 195.86573 * 13 12 11 15 15 N 1.28906 * 109.48284 * 179.90785 * 14 13 12 16 16 C 1.30844 * 109.73867 * 0.03131 * 15 14 13 17 17 N 1.34696 * 107.07001 * 0.03718 * 16 15 14 18 18 C 1.46250 * 128.84604 * 179.82277 * 17 16 15 19 19 H 0.97008 * 119.99895 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.49742 * 309.41781 * 11 9 7 21 21 H 1.08993 * 109.49783 * 69.48427 * 11 9 7 22 22 H 1.09002 * 109.73085 * 70.94245 * 12 11 9 23 23 H 1.08993 * 109.72824 * 191.62571 * 12 11 9 24 24 H 1.07997 * 126.46295 * 180.02562 * 16 15 14 25 25 H 1.09002 * 109.59818 * 77.36670 * 18 17 16 26 26 H 1.09000 * 109.59474 * 316.91065 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6250 -2.5564 -0.8911 11 6 2.2465 -3.6629 -0.0005 12 6 1.4907 -4.9770 -0.2389 13 6 0.3105 -5.0164 0.6990 14 7 -0.4216 -6.0346 1.0354 15 7 -1.3330 -5.6539 1.8637 16 6 -1.2174 -4.3702 2.0886 17 7 -0.1749 -3.9328 1.3564 18 6 0.3675 -2.5787 1.2500 19 1 -0.4850 0.8401 -0.0004 20 1 2.9788 -3.5152 -0.7943 21 1 2.7566 -3.7052 0.9617 22 1 1.1422 -5.0192 -1.2708 23 1 2.1491 -5.8219 -0.0374 24 1 -1.8404 -3.7738 2.7387 25 1 0.9642 -2.3534 2.1340 26 1 -0.4502 -1.8629 1.1660 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085767.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:44 Heat of formation + Delta-G solvation = 60.738778 kcal Electronic energy + Delta-G solvation = -12021.338478 eV Core-core repulsion = 9907.705527 eV Total energy + Delta-G solvation = -2113.632951 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.52652 -36.67140 -32.99898 -32.81583 -29.95648 -28.23546 -25.38388 -23.29664 -21.60281 -21.43908 -18.65229 -16.70068 -16.21283 -15.54454 -14.72105 -14.35185 -13.68409 -13.40476 -12.98832 -12.85628 -11.79337 -11.53922 -11.10717 -11.04926 -10.82238 -10.64449 -10.12418 -9.85273 -9.54403 -9.42847 -9.21766 -8.67560 -8.51563 -6.35837 -4.43239 2.56426 3.14141 3.20934 3.22477 3.43337 3.47149 4.18325 4.88099 4.95500 5.28577 5.47876 5.62499 5.80567 5.99372 6.17128 6.22122 6.40555 6.46664 6.60897 6.77427 6.99798 7.13714 7.38585 7.58992 7.68284 8.01802 8.61698 9.25030 9.35541 10.71923 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.065355 B = 0.011105 C = 0.009865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.326306 B = 2520.797615 C = 2837.745715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.038 3.962 10 H 0.039 0.961 11 C -0.117 4.117 12 C -0.034 4.034 13 C 0.177 3.823 14 N -0.315 5.315 15 N -0.321 5.321 16 C 0.138 3.862 17 N -0.454 5.454 18 C 0.101 3.899 19 H 0.268 0.732 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.210 0.790 25 H 0.070 0.930 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -2.035 1.347 3.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.019 3.981 10 H 0.057 0.943 11 C -0.155 4.155 12 C -0.074 4.074 13 C -0.092 4.092 14 N -0.157 5.157 15 N -0.162 5.162 16 C -0.151 4.151 17 N -0.142 5.142 18 C -0.020 4.020 19 H 0.078 0.922 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.226 0.774 25 H 0.089 0.911 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.416 -3.249 1.442 3.826 hybrid contribution 0.692 2.440 0.108 2.539 sum 2.108 -0.809 1.549 2.738 Atomic orbital electron populations 1.69798 1.06090 1.27583 1.49582 1.25066 0.94989 0.99744 0.94169 0.86486 0.79534 0.82191 0.78917 1.19940 1.21102 1.20020 1.21018 0.93276 0.89409 1.52022 0.91619 1.19014 0.92734 0.93518 0.92794 0.94258 1.21816 0.98864 0.93090 1.01755 1.20272 0.90834 1.00164 0.96114 1.24757 1.00540 0.83758 1.00123 1.73894 1.04470 1.24792 1.12525 1.74305 1.18555 1.09248 1.14132 1.26073 0.93800 0.94122 1.01057 1.46766 1.23247 1.12302 1.31913 1.22860 1.00850 0.76446 1.01810 0.92245 0.90858 0.92578 0.89590 0.89696 0.77380 0.91124 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.92 11.44 55.43 0.63 -22.28 15 2 C 0.06 1.56 5.30 -17.82 -0.09 1.46 15 3 Si 0.90 19.32 29.54 -169.99 -5.02 14.30 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.52 -12.57 8.53 -34.44 -0.29 -12.87 15 8 H 0.07 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.04 0.85 2.11 -91.53 -0.19 0.66 15 10 H 0.04 0.97 8.12 -51.93 -0.42 0.55 15 11 C -0.12 -2.16 5.20 -26.41 -0.14 -2.29 15 12 C -0.03 -0.59 6.34 -27.59 -0.17 -0.76 15 13 C 0.18 3.61 7.75 -155.30 -1.20 2.41 15 14 N -0.32 -6.89 12.21 32.76 0.40 -6.49 15 15 N -0.32 -6.85 12.23 29.59 0.36 -6.49 15 16 C 0.14 2.63 12.83 -90.40 -1.16 1.47 15 17 N -0.45 -9.25 3.11 -115.52 -0.36 -9.61 15 18 C 0.10 2.14 5.92 -4.01 -0.02 2.12 15 19 H 0.27 6.62 8.31 -40.82 -0.34 6.28 15 20 H 0.07 1.26 8.12 -51.93 -0.42 0.84 15 21 H 0.06 1.02 8.12 -51.93 -0.42 0.60 15 22 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.21 3.07 8.06 -52.49 -0.42 2.64 15 25 H 0.07 1.47 8.12 -51.93 -0.42 1.05 15 26 H 0.12 2.71 6.41 -51.93 -0.33 2.38 15 LS Contribution 223.10 15.07 3.36 3.36 Total: -1.00 -27.61 223.10 -6.73 -34.34 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.83 Total: 0.67 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.28 Total: -7.81 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 1.04 Total: -44.87 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.61 -6.73 -34.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085767.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.077 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds