Wall clock time and date at job start Mon Mar 30 2020 02:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47685 * 264.80625 * 3 2 1 5 5 H 1.48507 * 109.47166 * 24.80888 * 3 2 1 6 6 H 1.48498 * 109.47155 * 144.80367 * 3 2 1 7 7 C 1.37881 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99545 * 4.69738 * 7 2 1 9 9 C 1.50694 * 120.00118 * 184.69593 * 7 2 1 10 10 H 1.09004 * 109.45088 * 335.19628 * 9 7 2 11 11 C 1.53137 * 109.43656 * 215.25349 * 9 7 2 12 12 C 1.53469 * 109.30543 * 170.54875 * 11 9 7 13 13 C 1.50797 * 108.13320 * 48.71359 * 12 11 9 14 14 N 1.29841 * 128.52483 * 164.09136 * 13 12 11 15 15 N 1.28908 * 109.47987 * 180.11045 * 14 13 12 16 16 C 1.30832 * 109.74192 * 359.97204 * 15 14 13 17 17 N 1.34498 * 107.13585 * 0.07874 * 16 15 14 18 18 C 1.46265 * 129.01088 * 180.31766 * 17 16 15 19 19 H 0.96997 * 120.00242 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.49947 * 290.49446 * 11 9 7 21 21 H 1.08995 * 109.50524 * 50.56301 * 11 9 7 22 22 H 1.09004 * 109.72416 * 168.37293 * 12 11 9 23 23 H 1.09000 * 109.72488 * 289.05233 * 12 11 9 24 24 H 1.07998 * 126.46659 * 179.97438 * 16 15 14 25 25 H 1.09003 * 109.59184 * 42.84759 * 18 17 16 26 26 H 1.08998 * 109.58955 * 282.54529 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6065 1.9831 -1.3943 5 1 1.3960 2.6819 0.5875 6 1 3.4874 1.4743 0.8070 7 6 2.0046 -1.1941 -0.0005 8 1 1.4672 -2.1277 -0.0775 9 6 3.5077 -1.1964 0.1063 10 1 3.8990 -0.2469 -0.2591 11 6 4.0768 -2.3409 -0.7371 12 6 5.6028 -2.2004 -0.8193 13 6 6.1298 -1.9804 0.5764 14 7 7.3498 -2.0901 1.0068 15 7 7.3870 -1.8203 2.2668 16 6 6.1851 -1.5257 2.6913 17 7 5.3576 -1.6201 1.6353 18 6 3.9151 -1.3863 1.5721 19 1 -0.4850 0.8400 0.0004 20 1 3.8237 -3.2947 -0.2741 21 1 3.6526 -2.2995 -1.7402 22 1 6.0341 -3.1105 -1.2364 23 1 5.8604 -1.3484 -1.4485 24 1 5.9083 -1.2586 3.7005 25 1 3.6649 -0.4903 2.1402 26 1 3.3873 -2.2434 1.9901 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085768.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:45 Heat of formation + Delta-G solvation = 46.876557 kcal Electronic energy + Delta-G solvation = -12030.411314 eV Core-core repulsion = 9916.177252 eV Total energy + Delta-G solvation = -2114.234062 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.17019 -38.41233 -34.85709 -34.38633 -32.07251 -30.06567 -27.18528 -24.89589 -23.15576 -23.01598 -20.27876 -19.14808 -17.88358 -17.24935 -16.39594 -15.98123 -15.34511 -15.08672 -14.66811 -14.64566 -13.85039 -13.38588 -12.93239 -12.66929 -12.53404 -11.95711 -11.70736 -11.54030 -11.38756 -11.33830 -10.91384 -10.75489 -10.11740 -8.35630 -6.43180 0.96301 1.31469 1.37018 1.42769 1.73326 1.86490 2.27770 2.98369 3.36662 3.75016 3.92975 3.96449 4.05477 4.43024 4.46587 4.53041 4.76533 4.88813 4.91287 5.15753 5.23650 5.39727 5.40890 5.52657 6.02555 6.24285 6.68584 7.24976 7.73758 8.79822 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.052476 B = 0.012486 C = 0.011652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.444109 B = 2241.980448 C = 2402.520643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.253 1.253 7 C -0.513 4.513 8 H 0.047 0.953 9 C 0.003 3.997 10 H 0.039 0.961 11 C -0.105 4.105 12 C -0.032 4.032 13 C 0.174 3.826 14 N -0.336 5.336 15 N -0.348 5.348 16 C 0.153 3.847 17 N -0.469 5.469 18 C 0.108 3.892 19 H 0.269 0.731 20 H 0.060 0.940 21 H 0.085 0.915 22 H 0.113 0.887 23 H 0.100 0.900 24 H 0.253 0.747 25 H 0.088 0.912 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 -0.760 1.530 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.177 1.177 7 C -0.551 4.551 8 H 0.066 0.934 9 C -0.016 4.016 10 H 0.058 0.942 11 C -0.143 4.143 12 C -0.072 4.072 13 C -0.095 4.095 14 N -0.176 5.176 15 N -0.188 5.188 16 C -0.136 4.136 17 N -0.158 5.158 18 C -0.014 4.014 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.104 0.896 22 H 0.132 0.868 23 H 0.119 0.881 24 H 0.269 0.731 25 H 0.106 0.894 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.484 -0.891 1.580 8.675 hybrid contribution -1.564 1.074 0.241 1.913 sum 6.920 0.184 1.821 7.158 Atomic orbital electron populations 1.70009 1.08121 1.28379 1.50879 1.25833 0.95244 1.02422 0.93735 0.85945 0.79058 0.79571 0.79506 1.19285 1.21474 1.17723 1.20943 0.89929 0.93582 1.50634 0.93441 1.19436 0.95252 0.96703 0.90210 0.94250 1.21677 0.92192 0.98529 1.01913 1.20440 0.95631 1.04988 0.86104 1.25384 0.87678 1.01805 0.94657 1.73888 1.17811 1.21499 1.04445 1.74293 1.20584 1.19663 1.04236 1.26895 0.86439 1.03380 0.96870 1.46712 1.11612 1.48846 1.08606 1.22778 0.73094 1.02998 1.02488 0.92172 0.92159 0.89632 0.86835 0.88145 0.73067 0.89358 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.74 13.96 21.45 0.30 -52.44 15 2 C 0.03 1.40 5.47 84.66 0.46 1.87 15 3 Si 0.93 39.52 26.98 68.60 1.85 41.37 15 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.25 -9.95 6.75 99.48 0.67 -9.27 15 7 C -0.51 -24.93 8.83 25.60 0.23 -24.71 15 8 H 0.05 2.58 8.06 -2.91 -0.02 2.56 15 9 C 0.00 0.13 1.78 -11.39 -0.02 0.11 15 10 H 0.04 1.57 5.27 -2.38 -0.01 1.56 15 11 C -0.10 -3.43 5.24 30.80 0.16 -3.27 15 12 C -0.03 -0.94 6.34 30.04 0.19 -0.75 15 13 C 0.17 6.09 7.75 138.07 1.07 7.16 15 14 N -0.34 -13.04 12.21 -50.16 -0.61 -13.65 15 15 N -0.35 -12.99 12.23 -60.43 -0.74 -13.73 15 16 C 0.15 4.73 12.82 180.34 2.31 7.04 15 17 N -0.47 -15.78 3.12 -519.39 -1.62 -17.40 15 18 C 0.11 3.73 6.30 86.53 0.55 4.27 15 19 H 0.27 14.30 8.31 -92.71 -0.77 13.53 15 20 H 0.06 1.96 8.12 -2.38 -0.02 1.94 15 21 H 0.09 2.73 8.11 -2.39 -0.02 2.71 15 22 H 0.11 2.77 8.14 -2.38 -0.02 2.75 15 23 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.25 5.19 8.06 -2.91 -0.02 5.16 15 25 H 0.09 2.96 8.07 -2.39 -0.02 2.94 15 26 H 0.09 3.11 8.12 -2.39 -0.02 3.09 15 Total: -1.00 -61.74 222.38 5.27 -56.47 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.14 Total: 7.63 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.95 Total: -8.27 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -2.67 Total: -97.21 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.85 Total: 41.37 kcal Total: -61.74 5.27 -56.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085768.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.349 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds