Wall clock time and date at job start Mon Mar 30 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.72288 * 59.37354 * 9 7 2 11 11 C 1.53468 * 109.72364 * 179.97438 * 9 7 2 12 12 C 1.53027 * 109.80377 * 170.00296 * 11 9 7 13 13 C 1.53466 * 109.80799 * 288.68279 * 12 11 9 14 14 C 1.50519 * 108.14947 * 50.34053 * 13 12 11 15 15 N 1.30240 * 130.09427 * 163.39317 * 14 13 12 16 16 N 1.29072 * 108.41150 * 180.14812 * 15 14 13 17 17 H 0.97002 * 124.57910 * 179.97438 * 16 15 14 18 18 N 1.29074 * 110.84848 * 359.95633 * 16 15 14 19 19 C 1.30237 * 108.41113 * 359.95383 * 18 16 15 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.41751 * 290.10930 * 11 9 7 22 22 H 1.08996 * 109.41448 * 49.97253 * 11 9 7 23 23 H 1.09000 * 109.41729 * 48.78897 * 12 11 9 24 24 H 1.09006 * 109.41566 * 168.57968 * 12 11 9 25 25 H 1.09001 * 109.72283 * 170.00581 * 13 12 11 26 26 H 1.08996 * 109.72598 * 290.62939 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6141 -2.5561 -0.8832 11 6 2.2431 -3.6701 -0.0018 12 6 1.4966 -4.9823 0.2481 13 6 1.0261 -5.0432 1.7076 14 6 0.3080 -3.7584 2.0226 15 7 -0.4967 -3.4661 3.0042 16 7 -0.8778 -2.2405 2.8677 17 1 -1.4822 -1.7815 3.4718 18 7 -0.3459 -1.7081 1.8191 19 6 0.4088 -2.5995 1.2430 20 1 -0.4849 0.8400 0.0004 21 1 2.7463 -3.7176 -0.9676 22 1 2.9823 -3.5194 0.7848 23 1 0.6325 -5.0394 -0.4138 24 1 2.1621 -5.8218 0.0467 25 1 0.3479 -5.8860 1.8406 26 1 1.8866 -5.1558 2.3671 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114256.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:58 Heat of formation + Delta-G solvation = 71.997904 kcal Electronic energy + Delta-G solvation = -12229.212593 eV Core-core repulsion = 10116.067874 eV Total energy + Delta-G solvation = -2113.144719 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.13935 -37.93012 -35.00770 -33.06850 -31.74690 -30.78432 -26.99495 -24.94742 -23.21877 -21.71028 -20.18197 -18.84664 -18.22525 -16.93028 -16.41652 -15.54087 -15.41217 -14.53939 -14.36405 -13.61345 -13.10312 -12.90873 -12.75867 -12.53181 -12.18968 -11.84026 -11.54870 -11.33290 -11.27747 -10.66253 -10.49684 -10.37761 -9.57347 -7.97371 -6.10759 1.27542 1.41013 1.43443 1.53428 2.01683 2.32023 2.49847 3.32285 3.57120 4.15120 4.34076 4.42023 4.69436 4.80762 4.97554 5.02723 5.17772 5.28137 5.42402 5.49279 5.69807 5.81598 5.89769 5.96804 6.36609 6.60854 6.94489 7.55532 7.86639 9.06358 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.015699 C = 0.012371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.730151 B = 1783.136890 C = 2262.733713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.114 3.886 10 H 0.012 0.988 11 C -0.101 4.101 12 C -0.109 4.109 13 C -0.019 4.019 14 C -0.027 4.027 15 N -0.313 5.313 16 N -0.298 5.298 17 H 0.465 0.535 18 N -0.245 5.245 19 C 0.031 3.969 20 H 0.254 0.746 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -7.735 2.575 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.093 3.907 10 H 0.030 0.970 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.058 4.058 14 C -0.194 4.194 15 N -0.154 5.154 16 N -0.128 5.128 17 H 0.316 0.684 18 N -0.083 5.083 19 C -0.137 4.137 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.612 -6.998 3.381 7.796 hybrid contribution 0.182 1.356 -0.067 1.369 sum 0.794 -5.642 3.314 6.592 Atomic orbital electron populations 1.70149 1.06697 1.26230 1.47398 1.25651 0.95521 1.01824 0.94895 0.85729 0.79381 0.80688 0.77101 1.19135 1.20532 1.21769 1.21324 0.92868 0.91243 1.53176 0.92548 1.17311 0.91320 0.94666 0.87386 0.96972 1.21579 0.97454 0.93515 1.01398 1.21617 1.00487 0.97979 0.94639 1.20024 0.98541 0.89512 0.97726 1.23647 1.01277 1.00378 0.94078 1.73309 1.16063 1.01266 1.24729 1.46587 1.38163 1.06610 1.21482 0.68372 1.74511 1.10754 1.25164 0.97888 1.24037 0.99001 0.89094 1.01582 0.93666 0.91217 0.92924 0.92612 0.87811 0.88720 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.07 10.81 21.45 0.23 -50.84 15 2 C 0.02 1.37 5.15 84.66 0.44 1.81 15 3 Si 0.94 44.62 29.54 68.60 2.03 46.65 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 15 7 C -0.55 -30.39 8.54 25.60 0.22 -30.17 15 8 H 0.06 3.06 7.75 -2.91 -0.02 3.03 15 9 C 0.11 5.72 2.47 -12.18 -0.03 5.69 15 10 H 0.01 0.69 8.14 -2.39 -0.02 0.67 15 11 C -0.10 -3.86 5.13 30.76 0.16 -3.70 15 12 C -0.11 -3.24 5.87 30.76 0.18 -3.06 15 13 C -0.02 -0.58 6.31 29.95 0.19 -0.39 15 14 C -0.03 -1.13 7.20 43.19 0.31 -0.82 15 15 N -0.31 -13.06 12.30 -47.75 -0.59 -13.65 15 16 N -0.30 -12.75 7.81 37.00 0.29 -12.46 15 17 H 0.47 15.90 8.96 -346.65 -3.11 12.79 15 18 N -0.25 -12.73 9.71 -47.75 -0.46 -13.19 15 19 C 0.03 1.56 6.25 43.19 0.27 1.83 15 20 H 0.25 14.39 8.31 -92.71 -0.77 13.62 15 21 H 0.07 2.45 8.14 -2.38 -0.02 2.43 15 22 H 0.05 2.01 8.08 -2.39 -0.02 1.99 15 23 H 0.06 1.72 8.11 -2.39 -0.02 1.70 15 24 H 0.10 2.23 8.14 -2.38 -0.02 2.21 15 25 H 0.09 2.44 8.14 -2.39 -0.02 2.43 15 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -67.03 220.33 1.31 -65.72 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -1.92 Total: 6.60 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 1.73 Total: -28.82 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -0.53 Total: -90.14 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.03 1.31 -65.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114256.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.715 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds