Wall clock time and date at job start Mon Mar 30 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99875 * 2 1 4 4 H 1.08997 * 109.47433 * 33.81790 * 3 2 1 5 5 C 1.50696 * 109.47435 * 273.81342 * 3 2 1 6 6 H 1.08001 * 120.00092 * 325.89655 * 5 3 2 7 7 C 1.37875 * 120.00262 * 145.88288 * 5 3 2 8 8 N 1.31520 * 119.99969 * 6.70922 * 7 5 3 9 9 Si 1.86795 * 120.00254 * 186.70836 * 7 5 3 10 10 H 1.48507 * 109.47161 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47119 * 300.00170 * 9 7 5 12 12 H 1.48494 * 109.47397 * 60.00303 * 9 7 5 13 13 C 1.50709 * 109.46930 * 153.81707 * 3 2 1 14 14 C 1.38644 * 120.78760 * 39.72103 * 13 3 2 15 15 C 1.38209 * 119.16032 * 179.75442 * 14 13 3 16 16 N 1.31868 * 120.76271 * 0.53223 * 15 14 13 17 17 C 1.31877 * 121.72468 * 359.73806 * 16 15 14 18 18 C 1.38193 * 120.76306 * 359.97438 * 17 16 15 19 19 H 1.09003 * 109.47428 * 183.74818 * 1 2 3 20 20 H 1.09008 * 109.47317 * 303.74553 * 1 2 3 21 21 H 1.08999 * 109.47315 * 63.74562 * 1 2 3 22 22 H 0.97005 * 119.99622 * 355.82135 * 8 7 5 23 23 H 1.08005 * 120.42272 * 359.97438 * 14 13 3 24 24 H 1.08001 * 119.62057 * 180.24833 * 15 14 13 25 25 H 1.08000 * 119.60953 * 180.02562 * 17 16 15 26 26 H 1.08001 * 120.41805 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3780 1.9847 0.5719 5 6 2.1282 1.8029 -1.4176 6 1 2.3358 1.1082 -2.2181 7 6 1.9708 3.1447 -1.6928 8 7 1.8494 4.0081 -0.7081 9 14 1.9299 3.7364 -3.4641 10 1 1.7528 5.2106 -3.4896 11 1 3.2061 3.3799 -4.1346 12 1 0.7990 3.0892 -4.1763 13 6 3.3793 1.2457 0.6270 14 6 4.2299 0.1805 0.3739 15 6 5.4802 0.1625 0.9626 16 7 5.8623 1.1372 1.7644 17 6 5.0777 2.1629 2.0319 18 6 3.8161 2.2520 1.4749 19 1 -0.3634 -1.0255 0.0672 20 1 -0.3634 0.5709 0.8546 21 1 -0.3634 0.4546 -0.9216 22 1 1.8097 3.6951 0.2092 23 1 3.9208 -0.6233 -0.2779 24 1 6.1503 -0.6617 0.7674 25 1 5.4257 2.9426 2.6932 26 1 3.1784 3.0947 1.6975 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133157.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:46 Heat of formation + Delta-G solvation = -39.379304 kcal Electronic energy + Delta-G solvation = -11865.502176 eV Core-core repulsion = 9715.235028 eV Total energy + Delta-G solvation = -2150.267148 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.02452 -38.70064 -35.38178 -33.43968 -32.03687 -29.05395 -27.16115 -25.41451 -24.18609 -22.71392 -19.34499 -17.86678 -17.68921 -16.52958 -16.22646 -16.03428 -15.64616 -15.34741 -14.70930 -14.49299 -14.26612 -13.49058 -13.00363 -12.59803 -12.59028 -12.02120 -11.74077 -11.66979 -10.84548 -10.62607 -10.41411 -10.00643 -9.92792 -8.75435 -6.53378 0.28837 0.43304 1.50265 1.55968 1.76680 2.46573 2.88375 3.06456 3.12840 3.62033 3.98276 4.20334 4.33649 4.34872 4.46164 4.55308 4.75536 4.76288 4.80177 4.94859 5.28037 5.55428 5.73261 5.86468 5.89993 6.40556 6.52107 7.04648 7.27755 8.59866 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.014592 C = 0.011862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.727303 B = 1918.388708 C = 2359.940881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.412 6.412 3 C 0.229 3.771 4 H 0.016 0.984 5 C -0.621 4.621 6 H 0.049 0.951 7 C -0.016 4.016 8 N -0.916 5.916 9 Si 1.112 2.888 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.267 1.267 13 C -0.023 4.023 14 C -0.168 4.168 15 C 0.091 3.909 16 N -0.513 5.513 17 C 0.094 3.906 18 C -0.187 4.187 19 H 0.105 0.895 20 H 0.031 0.969 21 H 0.029 0.971 22 H 0.263 0.737 23 H 0.130 0.870 24 H 0.185 0.815 25 H 0.180 0.820 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -4.620 1.858 5.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.332 6.332 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.659 4.659 6 H 0.068 0.932 7 C -0.217 4.217 8 N -0.552 5.552 9 Si 0.933 3.067 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.192 1.192 13 C -0.032 4.032 14 C -0.188 4.188 15 C -0.064 4.064 16 N -0.223 5.223 17 C -0.062 4.062 18 C -0.207 4.207 19 H 0.123 0.877 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.148 0.852 24 H 0.202 0.798 25 H 0.197 0.803 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.129 -3.477 1.325 4.287 hybrid contribution -1.189 -0.922 0.568 1.608 sum 0.939 -4.399 1.893 4.880 Atomic orbital electron populations 1.22654 0.80776 1.02669 0.99312 1.87643 1.20483 1.29764 1.95325 1.18713 0.87700 0.81504 0.94826 0.96643 1.22462 1.54155 0.96281 0.92958 0.93227 1.27264 0.91827 0.93312 1.09274 1.70964 1.46445 1.36943 1.00861 0.82987 0.77905 0.76055 0.69719 1.20403 1.20101 1.19228 1.20885 0.98024 0.93524 0.90729 1.21963 0.95396 0.99416 1.02042 1.23116 0.93962 0.97015 0.92352 1.67691 1.35797 1.02788 1.16043 1.22966 0.89581 0.96099 0.97540 1.21990 0.99261 0.99872 0.99604 0.87675 0.95050 0.95227 0.92586 0.85185 0.79821 0.80290 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 10.83 113.37 1.23 2.84 15 2 O -0.41 -19.34 9.75 -148.98 -1.45 -20.79 15 3 C 0.23 11.67 2.17 29.10 0.06 11.73 15 4 H 0.02 0.85 6.06 -2.39 -0.01 0.84 15 5 C -0.62 -34.27 8.52 25.60 0.22 -34.05 15 6 H 0.05 2.80 7.82 -2.91 -0.02 2.77 15 7 C -0.02 -0.86 5.45 84.65 0.46 -0.40 15 8 N -0.92 -52.44 13.62 21.45 0.29 -52.15 15 9 Si 1.11 48.51 29.91 68.60 2.05 50.56 15 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 12 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 13 C -0.02 -1.09 4.98 -19.67 -0.10 -1.19 15 14 C -0.17 -7.02 9.46 22.36 0.21 -6.81 15 15 C 0.09 3.29 11.18 84.68 0.95 4.24 15 16 N -0.51 -19.29 10.36 -195.84 -2.03 -21.32 15 17 C 0.09 3.52 11.18 84.68 0.95 4.46 15 18 C -0.19 -8.09 9.57 22.36 0.21 -7.88 15 19 H 0.10 3.16 8.14 -2.39 -0.02 3.14 15 20 H 0.03 1.14 8.00 -2.38 -0.02 1.12 15 21 H 0.03 1.18 8.11 -2.39 -0.02 1.16 15 22 H 0.26 14.93 5.36 -92.70 -0.50 14.43 15 23 H 0.13 5.28 7.85 -2.91 -0.02 5.26 15 24 H 0.18 5.01 8.06 -2.91 -0.02 4.99 15 25 H 0.18 5.29 8.06 -2.91 -0.02 5.27 15 26 H 0.12 5.27 7.05 -2.91 -0.02 5.25 15 Total: -1.00 -63.24 232.82 4.49 -58.75 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.44 Total: 11.99 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.19 Total: -27.05 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.74 Total: -73.46 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.45 Total: -20.79 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.05 Total: 50.56 kcal Total: -63.24 4.49 -58.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133157.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.370 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds