Wall clock time and date at job start Mon Mar 30 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99491 * 2 1 4 4 H 1.09000 * 109.47372 * 33.33454 * 3 2 1 5 5 C 1.50699 * 109.47316 * 273.33470 * 3 2 1 6 6 H 1.07997 * 120.00004 * 324.71394 * 5 3 2 7 7 C 1.37875 * 120.00069 * 144.71309 * 5 3 2 8 8 N 1.31513 * 119.99946 * 5.56803 * 7 5 3 9 9 Si 1.86804 * 120.00280 * 185.56303 * 7 5 3 10 10 H 1.48502 * 109.46689 * 59.99995 * 9 7 5 11 11 H 1.48495 * 109.47314 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47020 * 300.00597 * 9 7 5 13 13 C 1.50699 * 109.46991 * 153.33485 * 3 2 1 14 14 C 1.38228 * 119.62197 * 245.00153 * 13 3 2 15 15 C 1.38626 * 119.16568 * 180.27540 * 14 13 3 16 16 C 1.38671 * 118.41649 * 359.48145 * 15 14 13 17 17 C 1.38184 * 119.16638 * 0.47580 * 16 15 14 18 18 N 1.31859 * 119.61831 * 64.97988 * 13 3 2 19 19 H 1.09007 * 109.46585 * 175.21850 * 1 2 3 20 20 H 1.08998 * 109.47571 * 295.21964 * 1 2 3 21 21 H 1.09004 * 109.47302 * 55.22577 * 1 2 3 22 22 H 0.97007 * 120.00115 * 179.97438 * 8 7 5 23 23 H 1.08003 * 120.41106 * 0.02562 * 14 13 3 24 24 H 1.08004 * 120.79166 * 179.72288 * 15 14 13 25 25 H 1.08003 * 120.41506 * 180.22129 * 16 15 14 26 26 H 1.07998 * 119.61865 * 179.76554 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3735 1.9866 0.5647 5 6 2.1389 1.7981 -1.4184 6 1 2.3716 1.1037 -2.2121 7 6 1.9597 3.1352 -1.7028 8 7 1.7852 3.9977 -0.7254 9 14 1.9649 3.7219 -3.4763 10 1 0.8740 3.0467 -4.2241 11 1 1.7545 5.1914 -3.5122 12 1 3.2709 3.3938 -4.1023 13 6 3.3744 1.2481 0.6376 14 6 3.6029 1.9197 1.8240 15 6 4.8630 1.8651 2.3993 16 6 5.8476 1.1249 1.7626 17 6 5.5451 0.4789 0.5791 18 7 4.3362 0.5573 0.0576 19 1 -0.3633 -1.0242 -0.0857 20 1 -0.3634 0.4379 0.9297 21 1 -0.3634 0.5861 -0.8442 22 1 1.6594 4.9386 -0.9254 23 1 2.8107 2.4831 2.2946 24 1 5.0717 2.3836 3.3234 25 1 6.8396 1.0574 2.1843 26 1 6.3075 -0.0966 0.0751 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261146868.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:40 Heat of formation + Delta-G solvation = -13.565066 kcal Electronic energy + Delta-G solvation = -11819.622980 eV Core-core repulsion = 9670.475222 eV Total energy + Delta-G solvation = -2149.147759 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.23700 -36.46838 -32.84346 -31.58764 -30.80678 -27.22748 -25.39760 -23.40981 -22.53445 -20.65092 -16.75206 -16.13565 -15.62232 -14.92545 -14.79620 -14.09606 -13.71447 -13.53667 -12.78681 -12.47658 -12.07146 -11.60761 -11.18462 -10.99032 -10.67430 -10.51580 -10.00400 -9.47611 -9.05761 -8.71758 -8.51474 -8.24946 -7.96348 -6.15955 -4.20789 1.99531 2.13825 3.29107 3.31990 3.36895 4.34703 4.63915 5.10202 5.21998 5.34900 5.46892 5.75579 5.93090 6.06930 6.25460 6.35382 6.49361 6.59649 6.64687 6.85459 7.09137 7.15113 7.63260 7.81127 8.13195 8.36954 8.98497 9.10701 9.46993 10.89603 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.031808 B = 0.014533 C = 0.012045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.066462 B = 1926.165402 C = 2324.028709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.400 6.400 3 C 0.243 3.757 4 H 0.060 0.940 5 C -0.514 4.514 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.185 3.815 14 C -0.167 4.167 15 C -0.086 4.086 16 C -0.206 4.206 17 C 0.087 3.913 18 N -0.460 5.460 19 H 0.063 0.937 20 H 0.022 0.978 21 H 0.042 0.958 22 H 0.266 0.734 23 H 0.127 0.873 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 -2.728 4.521 5.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.319 6.319 3 C 0.186 3.814 4 H 0.078 0.922 5 C -0.552 4.552 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.728 3.272 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.047 3.953 14 C -0.187 4.187 15 C -0.112 4.112 16 C -0.226 4.226 17 C -0.071 4.071 18 N -0.169 5.169 19 H 0.081 0.919 20 H 0.041 0.959 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.435 -3.125 3.772 5.471 hybrid contribution 0.209 1.322 -0.101 1.342 sum 2.644 -1.803 3.672 4.871 Atomic orbital electron populations 1.22398 0.83211 1.00133 0.99237 1.87770 1.17829 1.31065 1.95230 1.18824 0.85660 0.80905 0.95966 0.92175 1.21440 1.47502 0.93279 0.92934 0.91323 1.25078 0.94263 0.96721 0.97956 1.69907 1.48498 1.02912 1.31577 0.86499 0.78964 0.77274 0.84448 1.19872 1.21203 1.19995 1.21866 0.96695 0.88681 0.88013 1.21965 0.97713 1.02077 0.96968 1.21383 0.93300 0.97284 0.99197 1.21871 0.99837 1.02101 0.98830 1.22698 0.94338 0.97042 0.93001 1.67574 0.99986 1.17215 1.32130 0.91889 0.95948 0.93941 0.92468 0.85504 0.86098 0.86251 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.97 10.79 101.05 1.09 2.06 15 2 O -0.40 -10.05 10.33 -35.23 -0.36 -10.42 15 3 C 0.24 6.44 2.51 -29.04 -0.07 6.37 15 4 H 0.06 1.65 6.84 -51.93 -0.35 1.29 15 5 C -0.51 -14.62 8.26 -34.44 -0.28 -14.91 15 6 H 0.07 2.02 7.82 -52.49 -0.41 1.61 15 7 C 0.06 1.75 5.45 -17.82 -0.10 1.65 15 8 N -0.89 -25.20 12.84 55.43 0.71 -24.49 15 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 13 C 0.19 4.63 5.80 -82.58 -0.48 4.15 15 14 C -0.17 -3.63 9.71 -39.44 -0.38 -4.01 15 15 C -0.09 -1.56 10.18 -39.28 -0.40 -1.95 15 16 C -0.21 -3.58 10.11 -39.44 -0.40 -3.98 15 17 C 0.09 1.72 11.18 -17.55 -0.20 1.53 15 18 N -0.46 -11.22 10.01 -9.47 -0.09 -11.32 15 19 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.04 0.90 8.01 -51.93 -0.42 0.48 15 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.13 2.62 7.95 -52.48 -0.42 2.20 15 24 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 25 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15 26 H 0.14 2.28 8.06 -52.49 -0.42 1.85 15 LS Contribution 237.42 15.07 3.58 3.58 Total: -1.00 -31.04 237.42 -5.26 -36.30 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -2.85 Total: -1.15 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.22 Total: -9.10 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.62 Total: -35.80 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.36 Total: -10.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.04 -5.26 -36.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146868.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.731 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds