Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33801 * 126.05609 * 2 1 4 4 C 1.34514 * 111.28874 * 180.02562 * 3 2 1 5 5 C 1.34293 * 109.16806 * 0.02562 * 4 3 2 6 6 C 1.39006 * 126.04694 * 180.02562 * 2 1 3 7 7 C 1.41377 * 127.41339 * 0.02562 * 6 2 1 8 8 H 1.08003 * 120.00418 * 20.94296 * 7 6 2 9 9 C 1.39697 * 119.99744 * 200.94134 * 7 6 2 10 10 N 1.31021 * 120.00000 * 11.26131 * 9 7 6 11 11 Si 1.86796 * 119.99912 * 191.25724 * 9 7 6 12 12 H 1.48498 * 109.47417 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47162 * 120.00513 * 11 9 7 14 14 H 1.48498 * 109.47236 * 239.99977 * 11 9 7 15 15 C 1.50875 * 109.35050 * 179.97438 * 5 4 3 16 16 N 1.48170 * 105.42313 * 342.82164 * 15 5 4 17 17 C 1.48105 * 103.20858 * 26.79198 * 16 15 5 18 18 H 1.08996 * 109.46929 * 274.50486 * 1 2 3 19 19 H 1.09000 * 109.46527 * 34.50834 * 1 2 3 20 20 H 1.09002 * 109.47371 * 154.49659 * 1 2 3 21 21 H 0.97002 * 120.00260 * 174.94984 * 10 9 7 22 22 H 1.09000 * 110.25433 * 223.83201 * 15 5 4 23 23 H 1.09005 * 110.25298 * 101.80970 * 15 5 4 24 24 H 1.00899 * 111.00040 * 267.82078 * 16 15 5 25 25 H 1.08994 * 110.22554 * 92.16716 * 17 16 15 26 26 H 1.08997 * 110.21926 * 214.02788 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2945 1.0817 0.0000 4 6 3.5953 0.7388 -0.0006 5 6 3.6983 -0.6001 -0.0015 6 6 2.3250 -1.1239 -0.0005 7 6 1.9225 -2.4792 -0.0016 8 1 0.9315 -2.7480 -0.3365 9 6 2.8067 -3.4707 0.4304 10 7 3.9178 -3.1374 1.0396 11 14 2.4049 -5.2716 0.1396 12 1 1.1016 -5.3807 -0.5638 13 1 3.4692 -5.8882 -0.6925 14 1 2.3249 -5.9777 1.4435 15 6 5.1560 -0.9894 -0.0028 16 7 5.8884 0.2277 -0.4243 17 6 4.9912 1.3268 0.0005 18 1 -0.3633 0.0807 1.0245 19 1 -0.3632 0.8469 -0.5822 20 1 -0.3634 -0.9275 -0.4425 21 1 4.4961 -3.8255 1.4045 22 1 5.3298 -1.7989 -0.7116 23 1 5.4672 -1.2896 0.9978 24 1 6.0259 0.2390 -1.4239 25 1 5.2571 1.6644 1.0021 26 1 5.0513 2.1560 -0.7045 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147643.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = 27.071462 kcal Electronic energy + Delta-G solvation = -12051.498627 eV Core-core repulsion = 9904.113001 eV Total energy + Delta-G solvation = -2147.385626 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.68973 -36.67679 -33.78560 -30.95946 -29.39806 -27.16575 -26.63289 -23.99780 -21.34012 -19.77949 -17.77825 -16.66828 -15.72240 -14.99965 -14.58954 -14.34093 -13.42266 -12.61103 -12.48109 -12.17680 -11.81364 -11.66372 -11.33299 -11.26595 -11.11462 -10.72055 -10.55048 -9.94617 -9.64635 -9.17283 -8.36529 -7.69420 -6.80538 -6.57685 -4.19002 2.95073 3.13731 3.18683 3.21443 3.91096 4.00921 4.08882 4.98279 5.33108 5.75918 5.86061 6.09361 6.20284 6.38473 6.52930 6.61204 6.67316 7.04980 7.07820 7.17682 7.29371 7.38318 7.76878 7.83920 7.94075 8.41552 8.84017 8.92551 9.13185 10.43018 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.016425 C = 0.011579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.707949 B = 1704.282299 C = 2417.509391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.211 4.211 3 O -0.181 6.181 4 C -0.126 4.126 5 C -0.195 4.195 6 C 0.069 3.931 7 C -0.454 4.454 8 H 0.075 0.925 9 C 0.076 3.924 10 N -0.814 5.814 11 Si 0.909 3.091 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.277 1.277 15 C 0.135 3.865 16 N -0.659 5.659 17 C 0.147 3.853 18 H 0.046 0.954 19 H 0.042 0.958 20 H 0.069 0.931 21 H 0.275 0.725 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.329 0.671 25 H 0.087 0.913 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 2.028 -1.900 2.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.259 4.259 3 O -0.081 6.081 4 C -0.177 4.177 5 C -0.199 4.199 6 C 0.066 3.934 7 C -0.485 4.485 8 H 0.093 0.907 9 C -0.138 4.138 10 N -0.442 5.442 11 Si 0.734 3.266 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.202 1.202 15 C 0.007 3.993 16 N -0.285 5.285 17 C 0.017 3.983 18 H 0.064 0.936 19 H 0.061 0.939 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.112 0.888 24 H 0.143 0.857 25 H 0.105 0.895 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.413 2.230 -1.290 2.938 hybrid contribution -0.913 -1.162 -0.611 1.599 sum 0.500 1.068 -1.901 2.237 Atomic orbital electron populations 1.19544 0.87136 1.00867 1.00122 1.22256 0.91783 0.82916 1.28910 1.83079 1.13473 1.35702 1.75887 1.23268 0.85535 0.96669 1.12243 1.22410 0.95803 0.93038 1.08624 1.18290 0.87648 0.92733 0.94761 1.18749 0.99859 0.89535 1.40394 0.90690 1.25722 0.93835 1.00920 0.93364 1.69842 1.10810 1.34993 1.28575 0.86262 0.79350 0.82289 0.78691 1.18801 1.20095 1.20219 1.20641 0.87466 0.89458 1.01742 1.64232 1.41011 1.03858 1.19438 1.20806 0.82147 0.93841 1.01510 0.93563 0.93893 0.91212 0.91481 0.92210 0.88828 0.85745 0.89530 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.42 10.29 36.01 0.37 -0.05 15 2 C -0.21 -5.53 7.49 -34.02 -0.25 -5.78 15 3 O -0.18 -4.73 10.52 6.46 0.07 -4.66 15 4 C -0.13 -3.09 8.31 -35.32 -0.29 -3.39 15 5 C -0.19 -5.16 6.21 -102.39 -0.64 -5.79 15 6 C 0.07 1.94 5.93 -104.88 -0.62 1.31 15 7 C -0.45 -12.52 9.10 -37.84 -0.34 -12.86 15 8 H 0.08 1.99 7.33 -52.48 -0.38 1.60 15 9 C 0.08 1.98 5.42 -17.35 -0.09 1.88 15 10 N -0.81 -21.43 9.80 55.54 0.54 -20.89 15 11 Si 0.91 19.44 29.58 -169.99 -5.03 14.41 15 12 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 13 H -0.28 -5.82 7.11 56.52 0.40 -5.41 15 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 15 C 0.13 3.13 5.72 -4.19 -0.02 3.10 15 16 N -0.66 -12.71 7.77 -113.91 -0.89 -13.60 15 17 C 0.15 2.86 7.47 -3.93 -0.03 2.83 15 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 20 H 0.07 1.41 7.46 -51.93 -0.39 1.02 15 21 H 0.27 6.64 8.31 -40.82 -0.34 6.31 15 22 H 0.06 1.41 8.08 -51.93 -0.42 0.99 15 23 H 0.09 2.30 7.51 -51.93 -0.39 1.91 15 24 H 0.33 5.65 8.92 -39.29 -0.35 5.30 15 25 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 225.10 15.07 3.39 3.39 Total: -1.00 -29.72 225.10 -6.59 -36.31 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.76 Total: 3.77 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.93 Total: -18.74 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.34 Total: -34.48 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.72 -6.59 -36.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147643.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.386 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds