Wall clock time and date at job start Mon Mar 30 2020 01:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48504 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47016 * 299.99522 * 3 2 1 6 6 H 1.48493 * 109.47155 * 60.00183 * 3 2 1 7 7 C 1.37880 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99600 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46618 * 179.97438 * 9 7 2 11 11 C 1.41375 * 128.01098 * 264.99986 * 10 9 7 12 12 N 1.30175 * 106.40111 * 180.02562 * 11 10 9 13 13 O 1.20923 * 111.59718 * 359.97438 * 12 11 10 14 14 C 1.34035 * 111.57389 * 0.02562 * 13 12 11 15 15 C 1.50699 * 126.77965 * 180.26609 * 14 13 12 16 16 C 1.53008 * 117.49669 * 8.42825 * 15 14 13 17 17 C 1.53006 * 117.49570 * 299.77061 * 15 14 13 18 18 H 0.96998 * 119.99982 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47329 * 60.00022 * 9 7 2 20 20 H 1.09000 * 109.46923 * 299.99918 * 9 7 2 21 21 H 1.08003 * 126.80166 * 359.96509 * 11 10 9 22 22 H 1.08999 * 115.55279 * 154.10477 * 15 14 13 23 23 H 1.08993 * 117.49543 * 359.97438 * 16 15 14 24 24 H 1.08999 * 117.49597 * 145.02702 * 16 15 14 25 25 H 1.08999 * 117.49729 * 214.97815 * 17 15 14 26 26 H 1.09005 * 117.49568 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.7223 -4.3694 -1.1091 12 7 3.5401 -5.2625 -0.6315 13 8 3.6201 -5.1937 0.5731 14 6 2.8428 -4.2182 1.0638 15 6 2.6865 -3.8314 2.5119 16 6 3.6316 -4.4834 3.5233 17 6 2.1585 -4.8970 3.4747 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8903 21 1 2.4689 -4.2137 -2.1474 22 1 2.3904 -2.7982 2.6932 23 1 4.3660 -5.1924 3.1412 24 1 3.9569 -3.8792 4.3701 25 1 1.5154 -4.5646 4.2896 26 1 1.9238 -5.8776 3.0605 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158330.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:53 Heat of formation + Delta-G solvation = 72.840603 kcal Electronic energy + Delta-G solvation = -11658.145515 eV Core-core repulsion = 9512.744587 eV Total energy + Delta-G solvation = -2145.400928 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.14986 -36.97721 -34.35362 -32.50690 -30.91532 -27.84995 -23.72734 -23.44933 -22.16633 -21.07925 -19.49111 -16.96699 -16.55990 -16.19402 -15.32173 -14.63749 -13.92789 -13.15572 -12.49117 -12.34148 -12.05967 -11.37119 -11.23738 -11.00560 -10.80591 -10.66557 -10.45473 -10.05189 -9.93299 -9.71800 -9.25452 -8.48484 -8.03669 -6.10564 -4.14504 2.14237 3.08669 3.25683 3.34087 3.39433 3.73563 4.20267 4.40010 4.88588 5.07858 5.16396 5.24514 5.26125 5.72487 5.80928 5.96585 6.06471 6.26898 6.30467 6.41390 6.58349 6.97609 7.46228 7.58414 7.85536 8.24372 8.90474 8.95133 9.49955 10.99354 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.037356 B = 0.011337 C = 0.009985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.367385 B = 2469.269249 C = 2803.508514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.084 3.916 10 C -0.137 4.137 11 C -0.015 4.015 12 N -0.386 5.386 13 O 0.081 5.919 14 C -0.038 4.038 15 C -0.060 4.060 16 C -0.175 4.175 17 C -0.170 4.170 18 H 0.262 0.738 19 H 0.032 0.968 20 H 0.035 0.965 21 H 0.183 0.817 22 H 0.143 0.857 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -6.310 4.974 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.047 3.953 10 C -0.140 4.140 11 C -0.192 4.192 12 N -0.091 5.091 13 O 0.015 5.985 14 C -0.101 4.101 15 C -0.079 4.079 16 C -0.212 4.212 17 C -0.207 4.207 18 H 0.072 0.928 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.200 0.800 22 H 0.161 0.839 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.261 -7.158 4.410 9.426 hybrid contribution -0.114 1.651 -0.127 1.660 sum 4.147 -5.507 4.284 8.116 Atomic orbital electron populations 1.69959 1.06007 1.26836 1.50374 1.24993 0.94868 0.99234 0.95098 0.86488 0.80152 0.83453 0.77714 1.19682 1.20892 1.20849 1.21090 0.93075 0.89807 1.51174 0.92497 1.17715 0.91336 0.87618 0.98627 1.21946 1.02122 1.00115 0.89855 1.24917 0.97483 0.94700 1.02113 1.73744 1.20755 1.22999 0.91559 1.84608 1.52713 1.45083 1.16065 1.23035 0.97442 0.93384 0.96221 1.20349 1.05313 0.99401 0.82799 1.23012 0.93303 1.03754 1.01167 1.23047 0.96795 0.99344 1.01526 0.92796 0.94962 0.94700 0.79967 0.83928 0.88436 0.88187 0.88037 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.51 -14.02 9.09 -34.44 -0.31 -14.33 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.08 2.13 5.38 -29.03 -0.16 1.97 15 10 C -0.14 -3.03 5.51 -104.42 -0.58 -3.61 15 11 C -0.01 -0.30 12.16 -17.06 -0.21 -0.51 15 12 N -0.39 -7.89 12.07 30.35 0.37 -7.53 15 13 O 0.08 1.61 10.99 17.19 0.19 1.80 15 14 C -0.04 -0.77 6.94 -35.30 -0.25 -1.01 15 15 C -0.06 -1.01 6.10 -91.76 -0.56 -1.57 15 16 C -0.18 -2.33 10.19 -26.69 -0.27 -2.60 15 17 C -0.17 -2.29 10.24 -26.69 -0.27 -2.56 15 18 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 19 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.03 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.18 3.26 8.06 -52.48 -0.42 2.84 15 22 H 0.14 2.57 8.14 -51.93 -0.42 2.14 15 23 H 0.10 1.28 8.02 -51.93 -0.42 0.86 15 24 H 0.10 1.14 8.14 -51.93 -0.42 0.71 15 25 H 0.10 1.19 8.14 -51.93 -0.42 0.76 15 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 239.26 15.07 3.61 3.61 Total: -1.00 -29.26 239.26 -5.74 -35.00 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -2.92 Total: -1.35 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.70 Total: -22.68 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 1.10 Total: -32.44 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.26 -5.74 -35.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158330.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.840 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds