Wall clock time and date at job start Mon Mar 30 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86807 * 119.99587 * 2 1 4 4 H 1.48495 * 109.47229 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46955 * 119.99773 * 3 2 1 6 6 H 1.48494 * 109.46862 * 239.99271 * 3 2 1 7 7 C 1.40065 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00355 * 156.72611 * 7 2 1 9 9 C 1.40070 * 119.99639 * 336.72690 * 7 2 1 10 10 C 1.39623 * 127.06103 * 340.97485 * 9 7 2 11 11 N 1.33023 * 107.46097 * 180.02562 * 10 9 7 12 12 C 1.31012 * 109.97830 * 359.97438 * 11 10 9 13 13 N 1.35069 * 109.65086 * 359.72934 * 12 11 10 14 14 C 1.46494 * 126.48908 * 180.30913 * 13 12 11 15 15 C 1.53934 * 113.73207 * 38.90725 * 14 13 12 16 16 N 1.48190 * 86.10201 * 221.95501 * 15 14 13 17 17 C 1.47955 * 90.79740 * 24.60040 * 16 15 14 18 18 H 0.96997 * 119.99460 * 174.01718 * 1 2 3 19 19 H 1.07997 * 126.26486 * 359.97438 * 10 9 7 20 20 H 1.07998 * 125.17085 * 180.02562 * 12 11 10 21 21 H 1.09004 * 112.94068 * 170.47436 * 14 13 12 22 22 H 1.08998 * 113.76281 * 336.24435 * 15 14 13 23 23 H 1.09004 * 113.75558 * 107.60387 * 15 14 13 24 24 H 1.00894 * 110.90434 * 271.70894 * 16 15 14 25 25 H 1.08998 * 113.75937 * 221.08276 * 17 16 15 26 26 H 1.09000 * 113.85889 * 89.72853 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0962 1.6966 1.2125 6 1 3.0963 1.6964 -1.2124 7 6 2.0090 -1.2129 0.0005 8 1 3.0231 -1.2511 -0.3690 9 6 1.3941 -2.3764 0.4804 10 6 0.2739 -2.4553 1.3101 11 7 0.0249 -3.7445 1.5230 12 6 0.9038 -4.4808 0.8891 13 7 1.7686 -3.6843 0.2242 14 6 2.8923 -4.1216 -0.6078 15 6 2.5860 -5.3683 -1.4571 16 7 3.9423 -5.8328 -1.0820 17 6 3.9123 -4.9992 0.1400 18 1 -0.4849 -0.8355 -0.0876 19 1 -0.2870 -1.6221 1.7070 20 1 0.9298 -5.5605 0.8934 21 1 3.3454 -3.3066 -1.1723 22 1 1.7833 -5.9869 -1.0557 23 1 2.4711 -5.1579 -2.5204 24 1 4.6326 -5.4928 -1.7347 25 1 4.8551 -4.4943 0.3505 26 1 3.4988 -5.5080 1.0108 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261169429.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:38 Heat of formation + Delta-G solvation = 81.890135 kcal Electronic energy + Delta-G solvation = -11924.801736 eV Core-core repulsion = 9812.085977 eV Total energy + Delta-G solvation = -2112.715759 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.54079 -38.53723 -33.86465 -31.61583 -28.28897 -25.92198 -25.65947 -24.71039 -21.26027 -19.97154 -18.86726 -17.65381 -16.44658 -15.75677 -14.28674 -14.15577 -13.50883 -13.29312 -12.86191 -12.53416 -12.41480 -12.08111 -11.69640 -11.15651 -11.06672 -10.85382 -10.39316 -9.99867 -9.12617 -8.61646 -8.47331 -8.27689 -7.17738 -7.14338 -4.35578 3.03612 3.16997 3.36733 3.53543 3.94113 4.03333 4.18357 4.49195 4.86039 5.02022 5.20466 5.36815 5.66340 5.69379 5.79908 5.95697 6.02034 6.19557 6.66746 7.18362 7.24417 7.45608 7.62864 8.01472 8.09842 8.60267 8.77594 8.98124 9.72083 10.17461 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.042472 B = 0.012633 C = 0.010442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.097897 B = 2215.937471 C = 2680.722900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.047 3.953 3 Si 1.072 2.928 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.189 3.811 10 C -0.186 4.186 11 N -0.470 5.470 12 C 0.057 3.943 13 N -0.487 5.487 14 C 0.092 3.908 15 C 0.012 3.988 16 N -0.655 5.655 17 C 0.008 3.992 18 H 0.302 0.698 19 H 0.148 0.852 20 H 0.168 0.832 21 H 0.110 0.890 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.335 0.665 25 H 0.075 0.925 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -3.573 -3.550 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.175 4.175 3 Si 0.896 3.104 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.078 3.922 10 C -0.333 4.333 11 N -0.187 5.187 12 C -0.217 4.217 13 N -0.180 5.180 14 C -0.016 4.016 15 C -0.119 4.119 16 N -0.281 5.281 17 C -0.123 4.123 18 H 0.116 0.884 19 H 0.165 0.835 20 H 0.185 0.815 21 H 0.128 0.872 22 H 0.121 0.879 23 H 0.095 0.905 24 H 0.149 0.851 25 H 0.093 0.907 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.292 -3.172 -2.785 7.577 hybrid contribution 0.999 -0.433 -0.887 1.404 sum 7.291 -3.605 -3.672 8.924 Atomic orbital electron populations 1.70398 1.08078 1.34655 1.30007 1.26801 0.95664 1.03449 0.91626 0.83536 0.75411 0.73839 0.77611 1.19795 1.20157 1.20525 1.19285 1.01385 0.92483 1.43091 0.91537 1.19110 0.94910 0.82783 0.95433 1.22177 1.05714 0.92572 1.12788 1.69356 1.23892 1.04482 1.21010 1.23516 0.94556 0.96349 1.07242 1.45130 1.25153 1.06800 1.40955 1.24352 0.87743 0.96802 0.92667 1.24194 0.93553 0.94232 0.99908 1.65190 1.03899 1.52934 1.06112 1.24223 0.99126 0.93379 0.95607 0.88397 0.83511 0.81533 0.87196 0.87883 0.90522 0.85084 0.90653 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.04 12.66 55.56 0.70 -21.34 15 2 C 0.05 1.20 5.28 -17.28 -0.09 1.11 15 3 Si 1.07 21.68 29.99 -169.99 -5.10 16.58 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.28 -5.30 7.11 56.52 0.40 -4.89 15 7 C -0.53 -13.95 8.88 -38.21 -0.34 -14.29 15 8 H 0.07 1.67 7.44 -52.49 -0.39 1.28 15 9 C 0.19 5.10 6.37 -83.68 -0.53 4.56 15 10 C -0.19 -5.22 9.97 -16.52 -0.16 -5.39 15 11 N -0.47 -12.65 11.18 -13.59 -0.15 -12.80 15 12 C 0.06 1.33 11.28 -89.92 -1.01 0.32 15 13 N -0.49 -11.24 3.00 -109.78 -0.33 -11.57 15 14 C 0.09 1.65 4.70 -69.63 -0.33 1.33 15 15 C 0.01 0.18 8.48 -2.63 -0.02 0.15 15 16 N -0.65 -8.95 8.56 -116.97 -1.00 -9.95 15 17 C 0.01 0.12 8.58 -2.76 -0.02 0.09 15 18 H 0.30 8.60 6.27 -40.82 -0.26 8.34 15 19 H 0.15 4.25 6.92 -52.49 -0.36 3.88 15 20 H 0.17 3.32 7.51 -52.49 -0.39 2.93 15 21 H 0.11 2.00 7.37 -51.93 -0.38 1.61 15 22 H 0.10 1.61 7.01 -51.93 -0.36 1.25 15 23 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.34 3.83 8.88 -39.30 -0.35 3.48 15 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.10 1.65 7.86 -51.93 -0.41 1.24 15 LS Contribution 225.79 15.07 3.40 3.40 Total: -1.00 -30.01 225.79 -7.54 -37.55 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.55 Total: 10.24 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.52 Total: -12.12 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.78 Total: -55.66 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.10 Total: 16.58 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.01 -7.54 -37.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169429.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.442 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds