Wall clock time and date at job start Mon Mar 30 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86807 * 119.99587 * 2 1 4 4 H 1.48495 * 109.47229 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46955 * 119.99773 * 3 2 1 6 6 H 1.48494 * 109.46862 * 239.99271 * 3 2 1 7 7 C 1.40065 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00355 * 156.72611 * 7 2 1 9 9 C 1.40070 * 119.99639 * 336.72690 * 7 2 1 10 10 C 1.39623 * 127.06103 * 340.97485 * 9 7 2 11 11 N 1.33023 * 107.46097 * 180.02562 * 10 9 7 12 12 C 1.31012 * 109.97830 * 359.97438 * 11 10 9 13 13 N 1.35069 * 109.65086 * 359.72934 * 12 11 10 14 14 C 1.46494 * 126.48908 * 180.30913 * 13 12 11 15 15 C 1.53934 * 113.73207 * 38.90725 * 14 13 12 16 16 N 1.48190 * 86.10201 * 221.95501 * 15 14 13 17 17 C 1.47955 * 90.79740 * 24.60040 * 16 15 14 18 18 H 0.96997 * 119.99460 * 174.01718 * 1 2 3 19 19 H 1.07997 * 126.26486 * 359.97438 * 10 9 7 20 20 H 1.07998 * 125.17085 * 180.02562 * 12 11 10 21 21 H 1.09004 * 112.94068 * 170.47436 * 14 13 12 22 22 H 1.08998 * 113.76281 * 336.24435 * 15 14 13 23 23 H 1.09004 * 113.75558 * 107.60387 * 15 14 13 24 24 H 1.00894 * 110.90434 * 271.70894 * 16 15 14 25 25 H 1.08998 * 113.75937 * 221.08276 * 17 16 15 26 26 H 1.09000 * 113.85889 * 89.72853 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0962 1.6966 1.2125 6 1 3.0963 1.6964 -1.2124 7 6 2.0090 -1.2129 0.0005 8 1 3.0231 -1.2511 -0.3690 9 6 1.3941 -2.3764 0.4804 10 6 0.2739 -2.4553 1.3101 11 7 0.0249 -3.7445 1.5230 12 6 0.9038 -4.4808 0.8891 13 7 1.7686 -3.6843 0.2242 14 6 2.8923 -4.1216 -0.6078 15 6 2.5860 -5.3683 -1.4571 16 7 3.9423 -5.8328 -1.0820 17 6 3.9123 -4.9992 0.1400 18 1 -0.4849 -0.8355 -0.0876 19 1 -0.2870 -1.6221 1.7070 20 1 0.9298 -5.5605 0.8934 21 1 3.3454 -3.3066 -1.1723 22 1 1.7833 -5.9869 -1.0557 23 1 2.4711 -5.1579 -2.5204 24 1 4.6326 -5.4928 -1.7347 25 1 4.8551 -4.4943 0.3505 26 1 3.4988 -5.5080 1.0108 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169429.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:38 Heat of formation + Delta-G solvation = 60.278184 kcal Electronic energy + Delta-G solvation = -11925.738901 eV Core-core repulsion = 9812.085977 eV Total energy + Delta-G solvation = -2113.652924 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.31830 -39.98561 -35.83395 -33.41824 -30.25152 -27.15494 -27.10225 -26.71697 -22.81779 -21.94787 -20.63961 -19.39090 -17.67091 -17.52531 -15.95852 -15.82353 -15.40131 -14.97584 -14.35171 -14.19719 -13.84345 -13.60241 -13.52204 -12.78195 -12.66133 -12.22871 -11.97633 -11.80102 -11.01515 -10.49909 -10.16320 -9.78484 -9.21111 -9.17172 -6.41453 1.29719 1.53227 1.79630 1.83809 2.27039 2.44943 2.54080 2.83692 3.11621 3.52227 3.72407 4.07228 4.21167 4.38955 4.51822 4.60815 4.66674 4.76381 4.97766 5.12975 5.43506 5.61120 5.99969 6.01672 6.25582 6.55330 6.83599 7.08822 7.71781 8.11623 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.042472 B = 0.012633 C = 0.010442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.097897 B = 2215.937471 C = 2680.722900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.007 3.993 3 Si 1.126 2.874 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.167 3.833 10 C -0.219 4.219 11 N -0.508 5.508 12 C 0.086 3.914 13 N -0.484 5.484 14 C 0.068 3.932 15 C 0.023 3.977 16 N -0.642 5.642 17 C 0.019 3.981 18 H 0.283 0.717 19 H 0.123 0.877 20 H 0.208 0.792 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.352 0.648 25 H 0.092 0.908 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.323 -4.369 -4.485 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.208 4.208 3 Si 0.943 3.057 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.054 3.946 10 C -0.364 4.364 11 N -0.226 5.226 12 C -0.190 4.190 13 N -0.176 5.176 14 C -0.037 4.037 15 C -0.108 4.108 16 N -0.270 5.270 17 C -0.112 4.112 18 H 0.095 0.905 19 H 0.140 0.860 20 H 0.224 0.776 21 H 0.125 0.875 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.168 0.832 25 H 0.110 0.890 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.418 -3.992 -3.748 10.042 hybrid contribution 0.369 -0.372 -0.614 0.807 sum 8.788 -4.364 -4.362 10.737 Atomic orbital electron populations 1.70521 1.09164 1.33376 1.32562 1.28435 0.95585 1.07023 0.89798 0.82897 0.74484 0.69339 0.79030 1.19972 1.19002 1.17750 1.19562 1.01899 0.92966 1.43852 0.90535 1.19295 0.94998 0.84644 0.95655 1.21993 1.07069 0.92771 1.14569 1.69309 1.25916 1.04196 1.23185 1.24291 0.92740 0.97807 1.04210 1.45388 1.26082 1.05364 1.40740 1.25000 0.87223 0.97975 0.93513 1.24155 0.94213 0.91979 1.00421 1.65173 1.03666 1.52290 1.05853 1.24129 0.98802 0.92488 0.95743 0.90503 0.85956 0.77578 0.87544 0.88154 0.88743 0.83228 0.88959 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.95 12.66 21.85 0.28 -46.68 15 2 C 0.01 0.38 5.28 85.28 0.45 0.83 15 3 Si 1.13 43.03 29.99 68.60 2.06 45.08 15 4 H -0.27 -10.50 7.11 99.48 0.71 -9.79 15 5 H -0.27 -9.61 7.11 99.48 0.71 -8.91 15 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 15 7 C -0.55 -29.14 8.88 23.16 0.21 -28.94 15 8 H 0.08 3.79 7.44 -2.91 -0.02 3.76 15 9 C 0.17 9.13 6.37 38.88 0.25 9.38 15 10 C -0.22 -12.79 9.97 84.85 0.85 -11.94 15 11 N -0.51 -27.63 11.18 -196.92 -2.20 -29.83 15 12 C 0.09 3.91 11.28 180.10 2.03 5.94 15 13 N -0.48 -21.84 3.00 -501.24 -1.50 -23.34 15 14 C 0.07 2.30 4.70 46.56 0.22 2.52 15 15 C 0.02 0.61 8.48 86.36 0.73 1.34 15 16 N -0.64 -15.04 8.56 -523.98 -4.49 -19.53 15 17 C 0.02 0.53 8.58 86.41 0.74 1.27 15 18 H 0.28 16.95 6.27 -92.71 -0.58 16.37 15 19 H 0.12 7.56 6.92 -2.91 -0.02 7.54 15 20 H 0.21 7.56 7.51 -2.91 -0.02 7.54 15 21 H 0.11 3.66 7.37 -2.38 -0.02 3.64 15 22 H 0.10 2.78 7.01 -2.39 -0.02 2.76 15 23 H 0.09 2.21 8.14 -2.38 -0.02 2.19 15 24 H 0.35 6.57 8.88 -89.70 -0.80 5.77 15 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.09 2.77 7.86 -2.39 -0.02 2.75 15 Total: -1.00 -66.14 225.79 0.21 -65.94 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.59 Total: 27.96 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 5.47 Total: -19.60 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -7.91 Total: -119.38 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.06 Total: 45.08 kcal Total: -66.14 0.21 -65.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169429.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.214 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds