Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86791 * 120.00144 * 2 1 4 4 H 1.48500 * 109.47319 * 273.98127 * 3 2 1 5 5 H 1.48507 * 109.47196 * 33.98048 * 3 2 1 6 6 H 1.48494 * 109.47374 * 153.98094 * 3 2 1 7 7 C 1.40171 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99780 * 190.93002 * 7 2 1 9 9 C 1.39844 * 119.99945 * 10.92670 * 7 2 1 10 10 C 1.39419 * 126.87477 * 7.33972 * 9 7 2 11 11 N 1.33328 * 107.08071 * 179.97438 * 10 9 7 12 12 C 1.30801 * 109.25752 * 359.97438 * 11 10 9 13 13 C 1.50700 * 125.15548 * 180.02562 * 12 11 10 14 14 C 1.53781 * 113.61541 * 37.49343 * 13 12 11 15 15 C 1.53775 * 87.08198 * 220.02185 * 14 13 12 16 16 C 1.53775 * 87.08296 * 25.43198 * 15 14 13 17 17 O 1.34017 * 109.68923 * 0.02562 * 12 11 10 18 18 H 0.96999 * 119.99659 * 359.97438 * 1 2 3 19 19 H 1.07995 * 126.45713 * 0.02562 * 10 9 7 20 20 H 1.08994 * 112.84878 * 168.80010 * 13 12 11 21 21 H 1.09003 * 113.61251 * 334.57228 * 14 13 12 22 22 H 1.09004 * 113.61057 * 105.46979 * 14 13 12 23 23 H 1.09003 * 113.61627 * 270.88499 * 15 14 13 24 24 H 1.08997 * 113.69282 * 139.99548 * 15 14 13 25 25 H 1.08999 * 113.62142 * 220.01886 * 16 15 14 26 26 H 1.09005 * 113.61640 * 89.11235 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 2.4054 2.0950 -1.3967 5 1 1.4841 2.6269 0.7825 6 1 3.5791 1.4173 0.6141 7 6 2.0089 -1.2140 -0.0005 8 1 3.0742 -1.2225 0.1768 9 6 1.3286 -2.4139 -0.2306 10 6 -0.0042 -2.5600 -0.6128 11 7 -0.2395 -3.8680 -0.7208 12 6 0.8525 -4.5279 -0.4329 13 6 0.9874 -6.0289 -0.4429 14 6 0.2049 -6.7101 -1.5780 15 6 -0.1680 -7.8009 -0.5602 16 6 0.0354 -6.7394 0.5337 17 8 1.8332 -3.6670 -0.1277 18 1 -0.4849 0.8401 0.0004 19 1 -0.7123 -1.7639 -0.7890 20 1 2.0223 -6.3613 -0.3635 21 1 -0.6488 -6.1303 -1.9291 22 1 0.8372 -7.0686 -2.3903 23 1 0.5509 -8.6190 -0.5138 24 1 -1.1979 -8.1470 -0.6467 25 1 0.5309 -7.1214 1.4262 26 1 -0.8646 -6.1675 0.7599 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261181824.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = -4.773947 kcal Electronic energy + Delta-G solvation = -11645.648368 eV Core-core repulsion = 9496.881821 eV Total energy + Delta-G solvation = -2148.766547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.06947 -39.35179 -36.01411 -34.72270 -31.24741 -28.38329 -26.46626 -25.40515 -22.95288 -21.87777 -20.11231 -19.49521 -17.78260 -16.95415 -16.76960 -16.05203 -15.40927 -15.03765 -14.06421 -13.67192 -13.33137 -13.24178 -13.11476 -12.93785 -12.55564 -12.05803 -11.74395 -11.62698 -11.43562 -11.31668 -11.16829 -10.78124 -9.38116 -8.86618 -6.60332 1.00879 1.35790 1.54823 1.60442 2.09812 2.34121 2.70287 3.02989 3.69541 3.84646 3.97023 4.09747 4.15579 4.74663 4.85589 4.89353 4.95425 5.08645 5.13452 5.15084 5.26526 5.36486 5.52503 5.68587 6.14359 6.30681 6.43402 6.58631 7.65538 8.15557 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.106031 B = 0.008503 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.009669 B = 3292.195056 C = 3409.564702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.030 3.970 3 Si 1.022 2.978 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.253 1.253 7 C -0.460 4.460 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.211 4.211 11 N -0.473 5.473 12 C 0.041 3.959 13 C -0.011 4.011 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.127 4.127 17 O -0.262 6.262 18 H 0.299 0.701 19 H 0.170 0.830 20 H 0.115 0.885 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -5.908 -0.311 6.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.187 4.187 3 Si 0.839 3.161 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.109 0.891 9 C 0.061 3.939 10 C -0.354 4.354 11 N -0.201 5.201 12 C -0.161 4.161 13 C -0.031 4.031 14 C -0.161 4.161 15 C -0.152 4.152 16 C -0.166 4.166 17 O -0.155 6.155 18 H 0.110 0.890 19 H 0.187 0.813 20 H 0.133 0.867 21 H 0.084 0.916 22 H 0.102 0.898 23 H 0.128 0.872 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.400 -6.132 -0.460 6.307 hybrid contribution 0.656 1.330 0.232 1.501 sum 2.056 -4.802 -0.228 5.229 Atomic orbital electron populations 1.69749 1.09434 1.31638 1.32983 1.27086 0.95912 1.04783 0.90884 0.84610 0.78482 0.73063 0.79910 1.18080 1.18169 1.17636 1.18855 0.96700 0.88039 1.45351 0.89146 1.21197 0.93752 0.82441 0.96467 1.23598 0.97551 0.91622 1.22649 1.69405 1.27733 1.06148 1.16779 1.25980 0.82436 0.94879 1.12789 1.21008 1.01195 0.80151 1.00703 1.22931 0.99602 0.97059 0.96551 1.22739 1.03173 0.95742 0.93551 1.22969 0.98427 0.97310 0.97855 1.84330 1.41833 1.16951 1.72357 0.88984 0.81277 0.86724 0.91585 0.89821 0.87171 0.90039 0.89824 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.95 10.58 21.87 0.23 -42.72 15 2 C 0.03 1.49 5.45 85.32 0.46 1.96 15 3 Si 1.02 37.13 29.58 68.60 2.03 39.16 15 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 5 H -0.26 -8.66 7.11 99.48 0.71 -7.95 15 6 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 7 C -0.46 -26.09 9.43 23.13 0.22 -25.87 15 8 H 0.09 4.82 7.87 -2.91 -0.02 4.80 15 9 C 0.11 6.96 7.04 22.94 0.16 7.12 15 10 C -0.21 -12.97 10.85 84.75 0.92 -12.05 15 11 N -0.47 -26.99 10.76 -300.13 -3.23 -30.22 15 12 C 0.04 2.12 7.38 88.26 0.65 2.77 15 13 C -0.01 -0.42 4.29 -11.01 -0.05 -0.47 15 14 C -0.12 -3.89 7.61 31.12 0.24 -3.65 15 15 C -0.11 -2.76 8.08 31.12 0.25 -2.51 15 16 C -0.13 -4.03 7.63 31.12 0.24 -3.80 15 17 O -0.26 -15.24 10.81 -11.83 -0.13 -15.36 15 18 H 0.30 13.85 8.30 -92.71 -0.77 13.08 15 19 H 0.17 10.61 6.05 -2.91 -0.02 10.59 15 20 H 0.11 3.77 8.14 -2.39 -0.02 3.75 15 21 H 0.07 2.45 7.72 -2.39 -0.02 2.43 15 22 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.11 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.06 2.22 8.09 -2.38 -0.02 2.20 15 Total: -1.00 -68.08 229.55 3.17 -64.90 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.18 Total: 20.75 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.09 Total: -36.51 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -3.00 Total: -72.94 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.13 Total: -15.36 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -68.08 3.17 -64.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261181824.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.127 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds