Wall clock time and date at job start Mon Mar 30 2020 02:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 C 1.38097 * 119.57923 * 324.72128 * 12 2 1 14 14 C 1.38789 * 119.28502 * 179.79583 * 13 12 2 15 15 C 1.38419 * 118.48429 * 0.47611 * 14 13 12 16 16 C 1.38884 * 119.11702 * 359.74638 * 15 14 13 17 17 O 1.35674 * 119.68511 * 180.02562 * 16 15 14 18 18 N 1.31929 * 119.58590 * 144.99834 * 12 2 1 19 19 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 20 20 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 23 23 H 1.08001 * 120.36079 * 0.02562 * 13 12 2 24 24 H 1.07998 * 120.75951 * 180.22026 * 14 13 12 25 25 H 1.08006 * 120.44606 * 179.72897 * 15 14 13 26 26 H 0.96693 * 113.99885 * 270.02129 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 6 1.3353 -1.7957 -1.7234 14 6 1.8011 -2.4426 -2.8595 15 6 2.9612 -1.9783 -3.4548 16 6 3.6133 -0.8839 -2.9016 17 8 4.7511 -0.4188 -3.4760 18 7 3.1356 -0.2907 -1.8201 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7095 1.1617 3.4844 23 1 0.4353 -2.1352 -1.2324 24 1 1.2727 -3.2916 -3.2675 25 1 3.3544 -2.4607 -4.3375 26 1 5.5589 -0.8260 -3.1344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261202079.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:02 Heat of formation + Delta-G solvation = -13.532520 kcal Electronic energy + Delta-G solvation = -11653.649406 eV Core-core repulsion = 9504.503059 eV Total energy + Delta-G solvation = -2149.146347 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.84702 -36.86516 -34.22215 -31.93398 -31.10103 -28.11832 -25.25241 -23.33496 -22.58821 -20.19397 -17.97175 -16.20276 -16.07603 -15.79741 -14.98497 -14.57936 -13.47564 -13.05922 -12.71566 -12.15151 -11.60661 -11.52248 -11.28075 -10.94751 -10.76777 -10.43714 -10.10609 -9.94489 -9.44021 -9.03370 -8.63974 -8.36090 -8.04339 -6.04502 -4.11683 1.63725 1.84175 3.30345 3.34774 3.37583 4.00936 4.38576 4.50760 5.17423 5.28221 5.42806 5.62363 5.70888 6.02241 6.32722 6.54948 6.68488 6.84039 6.88990 7.10831 7.28491 7.63735 7.81429 7.91379 8.02186 8.29604 8.75177 8.88355 9.52076 11.01547 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.047124 B = 0.010532 C = 0.009956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.039949 B = 2657.916647 C = 2811.776735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.049 0.951 4 C -0.505 4.505 5 H 0.054 0.946 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.203 3.797 13 C -0.183 4.183 14 C -0.069 4.069 15 C -0.219 4.219 16 C 0.299 3.701 17 O -0.490 6.490 18 N -0.505 5.505 19 H 0.091 0.909 20 H 0.011 0.989 21 H 0.033 0.967 22 H 0.263 0.737 23 H 0.139 0.861 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 -5.927 -7.633 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.067 0.933 4 C -0.543 4.543 5 H 0.072 0.928 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.066 3.934 13 C -0.203 4.203 14 C -0.094 4.094 15 C -0.240 4.240 16 C 0.120 3.880 17 O -0.296 6.296 18 N -0.223 5.223 19 H 0.109 0.891 20 H 0.031 0.969 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.157 0.843 24 H 0.147 0.853 25 H 0.145 0.855 26 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.697 -4.744 -7.528 9.058 hybrid contribution 0.359 -1.474 0.659 1.654 sum 2.056 -6.217 -6.868 9.490 Atomic orbital electron populations 1.21885 0.97173 0.99511 1.00834 1.17908 0.92676 0.96393 0.86898 0.93250 1.20842 1.31629 1.12378 0.89483 0.92765 1.24911 0.94975 0.94979 0.98877 1.69866 1.36406 1.22652 1.23721 0.86571 0.79272 0.79654 0.82018 1.20243 1.21136 1.20212 1.22064 0.86594 0.91023 0.93745 1.22127 1.02688 0.98246 0.97198 1.21410 0.94737 0.98480 0.94813 1.21825 0.99706 0.98783 1.03725 1.19277 0.88997 0.89720 0.89983 1.84731 1.14856 1.68080 1.61960 1.67154 1.14968 1.31554 1.08638 0.89081 0.96946 0.94847 0.92711 0.84339 0.85333 0.85483 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.40 37.16 0.31 -2.89 15 2 C 0.08 2.06 2.61 -92.92 -0.24 1.82 15 3 H 0.05 1.41 8.14 -51.93 -0.42 0.99 15 4 C -0.50 -13.88 8.55 -34.45 -0.29 -14.17 15 5 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 15 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 12 C 0.20 4.65 5.72 -82.60 -0.47 4.18 15 13 C -0.18 -3.53 9.17 -39.43 -0.36 -3.89 15 14 C -0.07 -1.10 10.17 -39.31 -0.40 -1.50 15 15 C -0.22 -3.55 10.04 -39.28 -0.39 -3.95 15 16 C 0.30 5.71 7.74 -17.12 -0.13 5.58 15 17 O -0.49 -8.02 13.56 -18.72 -0.25 -8.28 15 18 N -0.50 -11.54 10.30 -9.55 -0.10 -11.64 15 19 H 0.09 2.35 6.07 -51.93 -0.32 2.03 15 20 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 21 H 0.03 0.72 6.49 -51.93 -0.34 0.38 15 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.14 2.51 6.31 -52.49 -0.33 2.18 15 24 H 0.13 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 26 H 0.39 4.38 9.06 45.56 0.41 4.80 15 LS Contribution 230.13 15.07 3.47 3.47 Total: -1.00 -30.71 230.13 -5.16 -35.87 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -1.80 Total: 2.03 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.08 Total: -13.16 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.53 Total: -36.05 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.25 Total: -8.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.71 -5.16 -35.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202079.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.340 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds