Wall clock time and date at job start Mon Mar 30 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 C 1.38097 * 119.57923 * 324.72128 * 12 2 1 14 14 C 1.38789 * 119.28502 * 179.79583 * 13 12 2 15 15 C 1.38419 * 118.48429 * 0.47611 * 14 13 12 16 16 C 1.38884 * 119.11702 * 359.74638 * 15 14 13 17 17 O 1.35674 * 119.68511 * 180.02562 * 16 15 14 18 18 N 1.31929 * 119.58590 * 144.99834 * 12 2 1 19 19 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 20 20 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 23 23 H 1.08001 * 120.36079 * 0.02562 * 13 12 2 24 24 H 1.07998 * 120.75951 * 180.22026 * 14 13 12 25 25 H 1.08006 * 120.44606 * 179.72897 * 15 14 13 26 26 H 0.96693 * 113.99885 * 270.02129 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 6 1.3353 -1.7957 -1.7234 14 6 1.8011 -2.4426 -2.8595 15 6 2.9612 -1.9783 -3.4548 16 6 3.6133 -0.8839 -2.9016 17 8 4.7511 -0.4188 -3.4760 18 7 3.1356 -0.2907 -1.8201 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7095 1.1617 3.4844 23 1 0.4353 -2.1352 -1.2324 24 1 1.2727 -3.2916 -3.2675 25 1 3.3544 -2.4607 -4.3375 26 1 5.5589 -0.8260 -3.1344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261202079.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:01 Heat of formation + Delta-G solvation = -37.283475 kcal Electronic energy + Delta-G solvation = -11654.679325 eV Core-core repulsion = 9504.503059 eV Total energy + Delta-G solvation = -2150.176266 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.30519 -38.26438 -36.07397 -33.50386 -32.90066 -29.70427 -27.29666 -25.00260 -24.00066 -21.91061 -19.41544 -18.25025 -17.59523 -17.17163 -16.62731 -16.23202 -15.06030 -14.85698 -14.19940 -13.69349 -13.50652 -13.05449 -12.82269 -12.77038 -12.58778 -12.31421 -11.98622 -11.82735 -11.19252 -10.67666 -10.52920 -10.09771 -9.55625 -8.12203 -6.27666 0.21757 0.45706 1.42130 1.44040 1.51928 2.40549 2.70384 3.01117 3.16083 3.86402 4.09624 4.30246 4.33753 4.68301 4.78254 4.90589 5.09111 5.14771 5.22100 5.37313 5.54768 5.79238 5.82295 6.02926 6.25511 6.72029 6.77772 7.24089 7.39906 8.92762 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.047124 B = 0.010532 C = 0.009956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.039949 B = 2657.916647 C = 2811.776735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.080 3.920 3 H 0.000 1.000 4 C -0.521 4.521 5 H 0.046 0.954 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.168 3.832 13 C -0.190 4.190 14 C -0.052 4.052 15 C -0.200 4.200 16 C 0.285 3.715 17 O -0.495 6.495 18 N -0.552 5.552 19 H 0.064 0.936 20 H 0.026 0.974 21 H 0.050 0.950 22 H 0.265 0.735 23 H 0.146 0.854 24 H 0.180 0.820 25 H 0.171 0.829 26 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -8.245 -8.888 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.060 3.940 3 H 0.018 0.982 4 C -0.560 4.560 5 H 0.065 0.935 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.189 1.189 12 C 0.031 3.969 13 C -0.210 4.210 14 C -0.077 4.077 15 C -0.221 4.221 16 C 0.106 3.894 17 O -0.304 6.304 18 N -0.272 5.272 19 H 0.083 0.917 20 H 0.045 0.955 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.164 0.836 24 H 0.197 0.803 25 H 0.188 0.812 26 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.864 -7.071 -8.788 11.432 hybrid contribution 0.399 -0.743 0.925 1.252 sum 2.263 -7.815 -7.863 11.315 Atomic orbital electron populations 1.21693 0.95949 1.00311 1.00142 1.17714 0.93743 0.93946 0.88556 0.98202 1.21088 1.31691 1.12365 0.90825 0.93533 1.25716 0.95088 0.95667 1.01781 1.70002 1.37233 1.23792 1.24375 0.85579 0.78455 0.79032 0.78402 1.20315 1.20477 1.18942 1.21625 0.88231 0.93081 0.93923 1.22199 1.02744 0.97462 0.98566 1.21921 0.94225 0.98724 0.92818 1.22264 0.98781 0.96971 1.04044 1.19633 0.89922 0.90486 0.89359 1.84686 1.15341 1.68765 1.61626 1.66947 1.15773 1.33640 1.10883 0.91734 0.95509 0.93138 0.92626 0.83617 0.80308 0.81202 0.72612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.40 71.98 0.60 -5.32 15 2 C 0.08 4.26 2.61 -12.29 -0.03 4.22 15 3 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 4 C -0.52 -29.46 8.55 25.60 0.22 -29.24 15 5 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 6 C 0.02 0.93 5.30 84.65 0.45 1.38 15 7 N -0.92 -53.08 11.32 21.44 0.24 -52.84 15 8 Si 0.96 43.68 29.54 68.60 2.03 45.71 15 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 12 C 0.17 7.77 5.72 42.51 0.24 8.02 15 13 C -0.19 -6.99 9.17 22.37 0.21 -6.79 15 14 C -0.05 -1.43 10.17 22.44 0.23 -1.20 15 15 C -0.20 -5.64 10.04 22.47 0.23 -5.41 15 16 C 0.28 10.39 7.74 84.78 0.66 11.04 15 17 O -0.49 -15.31 13.56 -89.92 -1.22 -16.52 15 18 N -0.55 -25.56 10.30 -296.97 -3.06 -28.62 15 19 H 0.06 3.44 6.07 -2.39 -0.01 3.42 15 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.05 2.19 6.49 -2.39 -0.02 2.18 15 22 H 0.26 14.51 8.31 -92.70 -0.77 13.74 15 23 H 0.15 5.01 6.31 -2.91 -0.02 4.99 15 24 H 0.18 3.18 8.06 -2.91 -0.02 3.15 15 25 H 0.17 3.35 8.06 -2.91 -0.02 3.33 15 26 H 0.41 8.44 9.06 -74.06 -0.67 7.77 15 Total: -1.00 -68.84 230.13 1.31 -67.52 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.52 Total: 8.05 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 2.80 Total: -23.30 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.82 Total: -81.46 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.22 Total: -16.52 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.84 1.31 -67.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202079.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.239 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds