Wall clock time and date at job start Mon Mar 30 2020 01:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99742 * 2 1 4 4 H 1.48497 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47007 * 300.00313 * 3 2 1 6 6 H 1.48500 * 109.47248 * 60.00429 * 3 2 1 7 7 C 1.37880 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99607 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99723 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.67313 * 299.49515 * 9 7 2 11 11 C 1.53380 * 109.67394 * 178.95662 * 9 7 2 12 12 C 1.53096 * 109.45780 * 190.58876 * 11 9 7 13 13 C 1.53366 * 109.50105 * 69.89545 * 12 11 9 14 14 C 1.50806 * 108.41963 * 310.17848 * 13 12 11 15 15 N 1.33874 * 128.12047 * 196.56208 * 14 13 12 16 16 C 1.30514 * 108.55684 * 179.97438 * 15 14 13 17 17 O 1.34224 * 108.83365 * 0.02562 * 16 15 14 18 18 C 1.34049 * 107.57494 * 0.03251 * 17 16 15 19 19 H 0.96997 * 120.00113 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47479 * 310.56733 * 11 9 7 21 21 H 1.08997 * 109.47905 * 70.57556 * 11 9 7 22 22 H 1.08996 * 109.45867 * 309.88934 * 12 11 9 23 23 H 1.09003 * 109.47245 * 189.90686 * 12 11 9 24 24 H 1.08994 * 109.67392 * 190.44484 * 13 12 11 25 25 H 1.08995 * 109.67381 * 69.91029 * 13 12 11 26 26 H 1.08003 * 125.58118 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6303 -2.5645 0.8930 11 6 2.2435 -3.6684 -0.0275 12 6 1.4874 -4.9729 -0.2927 13 6 0.9755 -4.9832 -1.7384 14 6 0.2608 -3.6813 -2.0000 15 7 -0.5846 -3.3882 -2.9959 16 6 -0.9796 -2.1523 -2.8552 17 8 -0.3932 -1.6313 -1.7660 18 6 0.3833 -2.5833 -1.2298 19 1 -0.4850 0.8400 0.0004 20 1 2.9755 -3.5056 -0.8186 21 1 2.7548 -3.7333 0.9329 22 1 0.6430 -5.0489 0.3922 23 1 2.1573 -5.8189 -0.1386 24 1 0.2853 -5.8151 -1.8774 25 1 1.8162 -5.0846 -2.4247 26 1 -1.6653 -1.6334 -3.5087 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261208917.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:51 Heat of formation + Delta-G solvation = 9.848647 kcal Electronic energy + Delta-G solvation = -12268.309444 eV Core-core repulsion = 10120.176980 eV Total energy + Delta-G solvation = -2148.132464 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.07105 -36.40034 -33.86350 -32.32201 -29.53507 -28.25728 -25.05663 -22.36637 -21.60684 -20.61667 -18.48848 -16.67257 -15.63093 -15.26469 -14.65899 -14.23630 -13.88843 -13.00391 -12.56147 -12.14972 -11.89356 -11.45375 -11.23446 -10.97575 -10.51245 -10.39508 -10.11341 -9.90521 -9.63654 -9.53835 -9.09769 -8.51130 -7.26539 -6.14219 -4.23496 2.89577 3.23833 3.31842 3.35427 3.76217 4.20184 4.34489 5.06304 5.19601 5.59241 5.64804 5.83858 6.14088 6.19638 6.27143 6.43176 6.57308 6.66701 6.79876 6.90721 7.19949 7.41916 7.47505 7.53515 7.80472 8.13722 8.78346 8.98007 9.43183 10.91959 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.042704 B = 0.015948 C = 0.012497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.514001 B = 1755.248109 C = 2239.946770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.112 3.888 10 H 0.052 0.948 11 C -0.105 4.105 12 C -0.121 4.121 13 C -0.019 4.019 14 C -0.102 4.102 15 N -0.492 5.492 16 C 0.087 3.913 17 O -0.127 6.127 18 C 0.060 3.940 19 H 0.264 0.736 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -4.581 -1.161 4.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.093 3.907 10 H 0.069 0.931 11 C -0.143 4.143 12 C -0.159 4.159 13 C -0.057 4.057 14 C -0.223 4.223 15 N -0.222 5.222 16 C -0.138 4.138 17 O -0.007 6.007 18 C 0.002 3.998 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.593 -4.770 -1.636 5.078 hybrid contribution 0.348 1.524 0.173 1.573 sum 0.940 -3.246 -1.463 3.683 Atomic orbital electron populations 1.69906 1.05858 1.26940 1.46952 1.25049 0.94924 0.99512 0.94531 0.86462 0.80181 0.83341 0.77669 1.19601 1.20934 1.20801 1.21080 0.93229 0.89454 1.52903 0.91647 1.17647 0.90674 0.94303 0.88088 0.93071 1.21641 0.98132 0.93296 1.01198 1.21681 0.99982 0.98333 0.95948 1.19707 0.97565 0.91941 0.96445 1.21308 1.05512 0.98472 0.96985 1.69856 1.13125 1.14480 1.24736 1.27701 1.03096 0.90617 0.92391 1.84887 1.44685 1.38727 1.32440 1.24620 0.92071 0.84817 0.98337 0.92604 0.92328 0.91814 0.92105 0.92164 0.91815 0.91822 0.75859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.15 10.60 55.43 0.59 -23.56 15 2 C 0.06 1.76 5.15 -17.82 -0.09 1.67 15 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.53 -14.20 8.55 -34.44 -0.29 -14.50 15 8 H 0.07 1.72 7.75 -52.49 -0.41 1.31 15 9 C 0.11 2.75 2.49 -92.72 -0.23 2.52 15 10 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 11 C -0.11 -2.09 5.17 -26.48 -0.14 -2.23 15 12 C -0.12 -2.09 5.90 -26.49 -0.16 -2.24 15 13 C -0.02 -0.35 6.30 -27.64 -0.17 -0.52 15 14 C -0.10 -2.35 6.98 -82.91 -0.58 -2.93 15 15 N -0.49 -11.31 11.29 -11.08 -0.13 -11.44 15 16 C 0.09 1.92 13.23 52.20 0.69 2.61 15 17 O -0.13 -3.31 7.98 6.60 0.05 -3.25 15 18 C 0.06 1.51 6.27 -35.57 -0.22 1.29 15 19 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 20 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 21 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.06 1.05 8.12 -51.93 -0.42 0.63 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.23 3.73 8.06 -52.48 -0.42 3.31 15 LS Contribution 221.81 15.07 3.34 3.34 Total: -1.00 -30.08 221.81 -5.28 -35.36 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.92 Total: -2.00 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.20 Total: -14.34 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.46 Total: -35.00 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: 0.05 Total: -3.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -30.08 -5.28 -35.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208917.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.208 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds