Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99742 * 2 1 4 4 H 1.48497 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47007 * 300.00313 * 3 2 1 6 6 H 1.48500 * 109.47248 * 60.00429 * 3 2 1 7 7 C 1.37880 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99607 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99723 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.67313 * 299.49515 * 9 7 2 11 11 C 1.53380 * 109.67394 * 178.95662 * 9 7 2 12 12 C 1.53096 * 109.45780 * 190.58876 * 11 9 7 13 13 C 1.53366 * 109.50105 * 69.89545 * 12 11 9 14 14 C 1.50806 * 108.41963 * 310.17848 * 13 12 11 15 15 N 1.33874 * 128.12047 * 196.56208 * 14 13 12 16 16 C 1.30514 * 108.55684 * 179.97438 * 15 14 13 17 17 O 1.34224 * 108.83365 * 0.02562 * 16 15 14 18 18 C 1.34049 * 107.57494 * 0.03251 * 17 16 15 19 19 H 0.96997 * 120.00113 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47479 * 310.56733 * 11 9 7 21 21 H 1.08997 * 109.47905 * 70.57556 * 11 9 7 22 22 H 1.08996 * 109.45867 * 309.88934 * 12 11 9 23 23 H 1.09003 * 109.47245 * 189.90686 * 12 11 9 24 24 H 1.08994 * 109.67392 * 190.44484 * 13 12 11 25 25 H 1.08995 * 109.67381 * 69.91029 * 13 12 11 26 26 H 1.08003 * 125.58118 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6303 -2.5645 0.8930 11 6 2.2435 -3.6684 -0.0275 12 6 1.4874 -4.9729 -0.2927 13 6 0.9755 -4.9832 -1.7384 14 6 0.2608 -3.6813 -2.0000 15 7 -0.5846 -3.3882 -2.9959 16 6 -0.9796 -2.1523 -2.8552 17 8 -0.3932 -1.6313 -1.7660 18 6 0.3833 -2.5833 -1.2298 19 1 -0.4850 0.8400 0.0004 20 1 2.9755 -3.5056 -0.8186 21 1 2.7548 -3.7333 0.9329 22 1 0.6430 -5.0489 0.3922 23 1 2.1573 -5.8189 -0.1386 24 1 0.2853 -5.8151 -1.8774 25 1 1.8162 -5.0846 -2.4247 26 1 -1.6653 -1.6334 -3.5087 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208917.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -10.695367 kcal Electronic energy + Delta-G solvation = -12269.200299 eV Core-core repulsion = 10120.176980 eV Total energy + Delta-G solvation = -2149.023319 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.87188 -38.04589 -35.72150 -34.21411 -31.29436 -29.94507 -26.95489 -24.09733 -23.26226 -22.41905 -20.15905 -18.65628 -17.40858 -17.08763 -16.56566 -15.90197 -15.46251 -14.65910 -14.39992 -13.79390 -13.64381 -13.15040 -12.95185 -12.80809 -12.27558 -12.06628 -11.80202 -11.69662 -11.32326 -11.31605 -10.90213 -10.51375 -9.06306 -8.16993 -6.32727 1.07368 1.38914 1.40945 1.51747 2.00239 2.39168 2.51025 3.13987 3.50464 4.10561 4.20424 4.30055 4.52515 4.58254 4.82481 4.88645 5.08579 5.10107 5.22314 5.36204 5.46510 5.60984 5.67618 5.77386 5.86787 6.17420 6.75604 7.18366 7.36837 8.88457 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.042704 B = 0.015948 C = 0.012497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.514001 B = 1755.248109 C = 2239.946770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.105 3.895 10 H 0.021 0.979 11 C -0.099 4.099 12 C -0.112 4.112 13 C -0.021 4.021 14 C -0.098 4.098 15 N -0.507 5.507 16 C 0.094 3.906 17 O -0.159 6.159 18 C 0.016 3.984 19 H 0.263 0.737 20 H 0.054 0.946 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -5.394 -1.680 5.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.086 3.914 10 H 0.039 0.961 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.059 4.059 14 C -0.218 4.218 15 N -0.237 5.237 16 C -0.131 4.131 17 O -0.040 6.040 18 C -0.041 4.041 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 1.292 -5.607 -2.146 6.141 hybrid contribution 0.073 1.765 0.287 1.789 sum 1.364 -3.843 -1.859 4.481 Atomic orbital electron populations 1.70042 1.07090 1.27422 1.47937 1.25808 0.95709 1.02654 0.94316 0.85520 0.79236 0.79492 0.77539 1.18880 1.21091 1.20218 1.21440 0.93413 0.90919 1.52775 0.91758 1.17664 0.91093 0.95551 0.87087 0.96089 1.21580 0.97149 0.92999 1.01914 1.21648 1.00307 0.98137 0.94886 1.19937 0.98065 0.90216 0.97639 1.22010 1.04508 0.99485 0.95813 1.69931 1.13772 1.14966 1.25021 1.28794 1.02257 0.90619 0.91410 1.84830 1.45481 1.39943 1.33787 1.24700 0.93939 0.85809 0.99662 0.92798 0.92678 0.90380 0.92513 0.87883 0.89899 0.90345 0.71552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.86 10.60 21.45 0.23 -50.63 15 2 C 0.02 0.94 5.15 84.65 0.44 1.38 15 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 15 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.55 -29.78 8.55 25.60 0.22 -29.56 15 8 H 0.06 3.39 7.75 -2.91 -0.02 3.37 15 9 C 0.10 5.24 2.49 -12.15 -0.03 5.21 15 10 H 0.02 1.16 8.14 -2.39 -0.02 1.14 15 11 C -0.10 -3.81 5.17 30.75 0.16 -3.65 15 12 C -0.11 -3.54 5.90 30.75 0.18 -3.36 15 13 C -0.02 -0.72 6.30 30.00 0.19 -0.53 15 14 C -0.10 -4.40 6.98 41.46 0.29 -4.11 15 15 N -0.51 -22.62 11.29 -303.49 -3.43 -26.05 15 16 C 0.09 4.04 13.23 130.44 1.73 5.77 15 17 O -0.16 -8.31 7.98 0.71 0.01 -8.31 15 18 C 0.02 0.80 6.27 24.87 0.16 0.95 15 19 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15 20 H 0.05 2.14 8.08 -2.38 -0.02 2.12 15 21 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 22 H 0.06 1.84 8.12 -2.39 -0.02 1.82 15 23 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.27 8.33 8.06 -2.91 -0.02 8.31 15 Total: -1.00 -64.90 221.81 3.33 -61.57 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.17 Total: 6.10 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.33 Total: -27.91 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -3.20 Total: -76.68 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.01 Total: -8.31 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.90 3.33 -61.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208917.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.879 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds