Wall clock time and date at job start Mon Mar 30 2020 02:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47189 * 2 1 4 4 C 1.35398 * 116.99328 * 180.02562 * 3 2 1 5 5 N 1.32049 * 119.88301 * 0.02562 * 4 3 2 6 6 C 1.32018 * 121.88884 * 180.02562 * 5 4 3 7 7 C 1.38641 * 121.41959 * 0.02562 * 6 5 4 8 8 C 1.38010 * 119.57549 * 359.97438 * 7 6 5 9 9 C 1.41012 * 118.26398 * 359.97438 * 8 7 6 10 10 C 1.41127 * 120.69818 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99917 * 150.38270 * 10 9 8 12 12 C 1.39951 * 120.00273 * 330.38650 * 10 9 8 13 13 N 1.30853 * 120.00243 * 161.81766 * 12 10 9 14 14 Si 1.86802 * 119.99631 * 341.81602 * 12 10 9 15 15 H 1.48503 * 109.46834 * 95.40052 * 14 12 10 16 16 H 1.48498 * 109.47066 * 215.39718 * 14 12 10 17 17 H 1.48500 * 109.47276 * 335.40217 * 14 12 10 18 18 H 1.09002 * 109.46998 * 299.99700 * 1 2 3 19 19 H 1.08999 * 109.47286 * 59.99179 * 1 2 3 20 20 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46876 * 239.99784 * 2 1 3 22 22 H 1.08999 * 109.47286 * 120.00821 * 2 1 3 23 23 H 1.08005 * 119.28884 * 180.02562 * 6 5 4 24 24 H 1.08001 * 120.20990 * 180.02562 * 7 6 5 25 25 H 1.08006 * 120.87060 * 180.02562 * 8 7 6 26 26 H 0.97008 * 119.99771 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3487 1.5245 -0.0005 5 7 4.1508 0.4755 -0.0015 6 6 5.4649 0.6024 -0.0016 7 6 6.0705 1.8495 -0.0001 8 6 5.2884 2.9866 0.0010 9 6 3.8867 2.8330 0.0000 10 6 3.0383 3.9607 0.0015 11 1 2.0641 3.9043 -0.4613 12 6 3.4592 5.1523 0.6028 13 7 2.8615 6.2792 0.3111 14 14 4.8745 5.1340 1.8219 15 1 6.1387 5.4675 1.1177 16 1 4.6225 6.1367 2.8880 17 1 4.9874 3.7836 2.4291 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 6.0813 -0.2844 -0.0029 24 1 7.1475 1.9306 -0.0006 25 1 5.7382 3.9686 0.0018 26 1 3.1531 7.1050 0.7282 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:17 Heat of formation + Delta-G solvation = -39.136251 kcal Electronic energy + Delta-G solvation = -11792.878300 eV Core-core repulsion = 9642.621691 eV Total energy + Delta-G solvation = -2150.256608 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.94884 -38.50971 -35.88873 -33.25364 -32.74283 -30.93564 -27.28667 -24.92986 -23.05827 -22.96775 -19.43411 -19.18893 -17.65062 -16.96107 -16.71786 -15.79461 -15.23238 -14.68780 -14.62932 -14.31162 -13.83103 -13.38918 -13.27261 -13.01567 -12.65666 -12.41002 -12.11606 -11.81829 -11.52091 -11.33533 -10.29572 -10.17061 -9.23139 -8.94340 -6.47737 0.58753 0.71234 1.23494 1.37252 1.46569 2.08821 2.51891 2.59235 3.43391 3.89107 4.15313 4.23696 4.31976 4.51587 4.56819 4.62847 4.81822 4.97473 4.99617 5.10445 5.23528 5.47181 5.62085 5.89237 6.15779 6.32267 6.66065 6.89313 7.41539 8.13738 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.015498 C = 0.011434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.141876 B = 1806.290433 C = 2448.224679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 O -0.325 6.325 4 C 0.206 3.794 5 N -0.526 5.526 6 C -0.001 4.001 7 C -0.149 4.149 8 C -0.206 4.206 9 C 0.018 3.982 10 C -0.456 4.456 11 H 0.056 0.944 12 C 0.046 3.954 13 N -0.840 5.840 14 Si 0.965 3.035 15 H -0.245 1.245 16 H -0.272 1.272 17 H -0.261 1.261 18 H 0.058 0.942 19 H 0.058 0.942 20 H 0.106 0.894 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.171 0.829 24 H 0.153 0.847 25 H 0.120 0.880 26 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -7.016 1.842 7.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 O -0.234 6.234 4 C 0.022 3.978 5 N -0.250 5.250 6 C -0.154 4.154 7 C -0.169 4.169 8 C -0.231 4.231 9 C 0.013 3.987 10 C -0.486 4.486 11 H 0.074 0.926 12 C -0.169 4.169 13 N -0.466 5.466 14 Si 0.788 3.212 15 H -0.169 1.169 16 H -0.198 1.198 17 H -0.185 1.185 18 H 0.078 0.922 19 H 0.077 0.923 20 H 0.124 0.876 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.188 0.812 24 H 0.170 0.830 25 H 0.138 0.862 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.357 -7.380 1.833 7.961 hybrid contribution 0.496 0.990 0.225 1.130 sum 2.853 -6.389 2.058 7.294 Atomic orbital electron populations 1.21792 0.91357 1.04010 1.02747 1.22613 0.96085 0.81491 1.01129 1.86138 1.17717 1.30332 1.89182 1.20171 0.83603 0.89932 1.04057 1.66824 1.07563 1.33229 1.17370 1.22245 0.88617 0.97550 1.06996 1.21873 1.01180 0.92673 1.01181 1.21372 0.92082 0.99107 1.10579 1.17945 0.93437 0.91116 0.96187 1.19173 1.02568 0.94105 1.32769 0.92553 1.26867 0.99257 0.93444 0.97343 1.69715 1.39962 1.00121 1.36771 0.85490 0.78305 0.79182 0.78252 1.16936 1.19830 1.18467 0.92244 0.92318 0.87566 0.92911 0.92826 0.81165 0.82966 0.86199 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 10.28 71.98 0.74 -3.34 15 2 C 0.06 2.33 6.03 71.98 0.43 2.77 15 3 O -0.32 -16.05 9.48 -86.92 -0.82 -16.87 15 4 C 0.21 10.58 7.54 85.46 0.64 11.22 15 5 N -0.53 -24.22 9.20 -306.94 -2.83 -27.05 15 6 C 0.00 -0.06 11.17 84.76 0.95 0.89 15 7 C -0.15 -5.88 10.08 22.31 0.22 -5.66 15 8 C -0.21 -9.66 7.28 22.90 0.17 -9.49 15 9 C 0.02 0.98 5.13 -21.09 -0.11 0.87 15 10 C -0.46 -26.48 9.21 23.39 0.22 -26.27 15 11 H 0.06 3.60 7.91 -2.91 -0.02 3.58 15 12 C 0.05 2.49 5.42 85.25 0.46 2.95 15 13 N -0.84 -45.93 13.93 21.83 0.30 -45.63 15 14 Si 0.97 41.99 24.53 68.60 1.68 43.67 15 15 H -0.24 -9.64 6.70 99.48 0.67 -8.97 15 16 H -0.27 -11.04 7.11 99.48 0.71 -10.34 15 17 H -0.26 -11.82 6.85 99.48 0.68 -11.14 15 18 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.11 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.05 1.93 8.11 -2.38 -0.02 1.91 15 22 H 0.05 1.96 8.11 -2.39 -0.02 1.94 15 23 H 0.17 5.26 8.06 -2.91 -0.02 5.24 15 24 H 0.15 4.59 8.06 -2.91 -0.02 4.57 15 25 H 0.12 5.39 4.80 -2.91 -0.01 5.38 15 26 H 0.30 14.41 8.30 -92.70 -0.77 13.64 15 Total: -1.00 -63.71 227.71 3.17 -60.54 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.11 Total: 11.40 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 3.73 Total: -26.06 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -2.52 Total: -72.68 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.82 Total: -16.87 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.68 Total: 43.67 kcal Total: -63.71 3.17 -60.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.406 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds