Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46675 * 2 1 4 4 C 1.35685 * 116.99899 * 179.97438 * 3 2 1 5 5 C 1.39600 * 120.28298 * 179.97438 * 4 3 2 6 6 C 1.36862 * 118.66461 * 180.02562 * 5 4 3 7 7 C 1.40774 * 119.19328 * 0.02562 * 6 5 4 8 8 C 1.41169 * 119.74588 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00489 * 359.97438 * 8 7 6 10 10 C 1.40005 * 120.00155 * 180.02562 * 8 7 6 11 11 N 1.30778 * 119.99935 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00254 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47293 * 89.99469 * 12 10 8 14 14 H 1.48496 * 109.47406 * 209.99729 * 12 10 8 15 15 H 1.48507 * 109.46917 * 329.99819 * 12 10 8 16 16 N 1.33691 * 120.51215 * 0.02562 * 7 6 5 17 17 C 1.31352 * 121.42695 * 359.66780 * 16 7 6 18 18 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47279 * 300.00104 * 1 2 3 20 20 H 1.08999 * 109.47266 * 60.00158 * 1 2 3 21 21 H 1.08998 * 109.47781 * 239.99967 * 2 1 3 22 22 H 1.08999 * 109.47266 * 119.99842 * 2 1 3 23 23 H 1.07999 * 120.66713 * 359.97438 * 5 4 3 24 24 H 1.07998 * 120.39983 * 179.97438 * 6 5 4 25 25 H 0.97005 * 120.00279 * 180.02562 * 11 10 8 26 26 H 1.07996 * 119.61564 * 180.30618 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8912 2.8126 0.0000 6 6 5.2526 2.9536 0.0001 7 6 6.0622 1.8019 0.0001 8 6 7.4677 1.9338 0.0006 9 1 7.9180 2.9155 0.0007 10 6 8.2780 0.7921 0.0001 11 7 7.7328 -0.3966 -0.0005 12 14 10.1378 0.9666 0.0001 13 1 10.6307 1.0123 1.4002 14 1 10.7439 -0.1940 -0.7004 15 1 10.5173 2.2204 -0.6994 16 7 5.5103 0.5843 -0.0005 17 6 4.2067 0.4231 0.0054 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.2476 3.6798 -0.0012 24 1 5.7002 3.9364 -0.0007 25 1 8.2942 -1.1877 -0.0005 26 1 3.7922 -0.5741 0.0098 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222982.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -12.084069 kcal Electronic energy + Delta-G solvation = -11506.784747 eV Core-core repulsion = 9357.701210 eV Total energy + Delta-G solvation = -2149.083538 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91330 -36.86378 -33.41819 -31.44048 -30.47730 -29.05751 -25.22906 -23.44240 -21.46725 -20.74434 -17.51300 -16.97579 -15.64165 -15.34737 -14.66445 -14.15134 -13.15947 -12.76935 -12.75263 -12.38384 -12.14397 -11.73599 -11.20186 -11.15447 -10.98208 -10.81698 -10.52731 -10.21985 -9.98890 -9.17664 -8.27069 -7.58749 -7.20814 -6.38938 -4.39494 2.71726 2.96207 3.10392 3.13458 3.20586 3.97055 4.20442 4.75039 5.31505 5.43962 5.66732 5.83584 5.87211 5.99309 6.13842 6.15875 6.24204 6.58427 6.71787 6.94900 7.21623 7.36742 7.48834 7.87988 8.19891 8.45350 8.70216 8.95013 10.05536 10.34676 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.080435 B = 0.008841 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.024326 B = 3166.368624 C = 3493.946270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 O -0.330 6.330 4 C -0.085 4.085 5 C -0.076 4.076 6 C -0.243 4.243 7 C 0.235 3.765 8 C -0.435 4.435 9 H 0.084 0.916 10 C 0.068 3.932 11 N -0.723 5.723 12 Si 0.908 3.092 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.262 1.262 16 N -0.459 5.459 17 C 0.059 3.941 18 H 0.068 0.932 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.272 0.728 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -0.360 0.009 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.245 6.245 4 C -0.132 4.132 5 C -0.101 4.101 6 C -0.266 4.266 7 C 0.109 3.891 8 C -0.466 4.466 9 H 0.102 0.898 10 C -0.156 4.156 11 N -0.345 5.345 12 Si 0.732 3.268 13 H -0.195 1.195 14 H -0.202 1.202 15 H -0.186 1.186 16 N -0.173 5.173 17 C -0.105 4.105 18 H 0.087 0.913 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.736 -1.164 -0.001 4.877 hybrid contribution 0.306 0.503 0.008 0.589 sum -4.430 -0.662 0.007 4.479 Atomic orbital electron populations 1.21732 0.94158 1.01836 1.02763 1.22418 0.94456 0.84149 1.00520 1.85772 1.20542 1.26658 1.91561 1.19655 0.81706 0.95416 1.16404 1.19977 0.94710 0.93643 1.01788 1.21388 0.92598 0.99099 1.13562 1.18585 0.93935 0.86356 0.90180 1.19503 0.89688 0.93872 1.43578 0.89834 1.26050 1.00915 0.94991 0.93631 1.70143 1.36548 0.98273 1.29536 0.86333 0.82299 0.79019 0.79168 1.19460 1.20188 1.18578 1.68737 1.08242 1.24441 1.15854 1.22855 0.91341 0.95900 1.00444 0.91264 0.92101 0.92096 0.93204 0.93206 0.87821 0.87541 0.91712 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 37.16 0.38 -1.50 15 2 C 0.06 1.01 5.46 37.16 0.20 1.22 15 3 O -0.33 -7.00 10.14 -18.76 -0.19 -7.19 15 4 C -0.08 -2.03 6.74 -38.60 -0.26 -2.29 15 5 C -0.08 -1.81 10.06 -39.57 -0.40 -2.21 15 6 C -0.24 -6.10 9.77 -39.12 -0.38 -6.48 15 7 C 0.24 6.58 6.55 -84.99 -0.56 6.03 15 8 C -0.43 -11.81 9.13 -37.81 -0.35 -12.15 15 9 H 0.08 2.10 7.85 -52.49 -0.41 1.69 15 10 C 0.07 1.77 5.50 -17.34 -0.10 1.68 15 11 N -0.72 -19.61 11.45 55.55 0.64 -18.97 15 12 Si 0.91 18.79 29.56 -169.99 -5.02 13.77 15 13 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 14 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 15 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 16 N -0.46 -13.04 7.85 -10.96 -0.09 -13.12 15 17 C 0.06 1.49 10.22 -17.28 -0.18 1.32 15 18 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.05 0.82 7.68 -51.93 -0.40 0.42 15 22 H 0.05 0.82 7.66 -51.93 -0.40 0.42 15 23 H 0.10 2.17 8.06 -52.49 -0.42 1.75 15 24 H 0.11 2.41 8.06 -52.49 -0.42 1.99 15 25 H 0.27 6.66 8.30 -40.82 -0.34 6.33 15 26 H 0.12 2.74 6.31 -52.49 -0.33 2.41 15 LS Contribution 232.35 15.07 3.50 3.50 Total: -1.00 -30.09 232.35 -5.58 -35.67 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -2.79 Total: 0.74 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.63 Total: -14.39 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.55 Total: -32.09 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.19 Total: -7.19 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.09 -5.58 -35.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222982.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.589 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds