Wall clock time and date at job start Mon Mar 30 2020 02:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46675 * 2 1 4 4 C 1.35685 * 116.99899 * 179.97438 * 3 2 1 5 5 C 1.39600 * 120.28298 * 179.97438 * 4 3 2 6 6 C 1.36862 * 118.66461 * 180.02562 * 5 4 3 7 7 C 1.40774 * 119.19328 * 0.02562 * 6 5 4 8 8 C 1.41169 * 119.74588 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00489 * 359.97438 * 8 7 6 10 10 C 1.40005 * 120.00155 * 180.02562 * 8 7 6 11 11 N 1.30778 * 119.99935 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00254 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47293 * 89.99469 * 12 10 8 14 14 H 1.48496 * 109.47406 * 209.99729 * 12 10 8 15 15 H 1.48507 * 109.46917 * 329.99819 * 12 10 8 16 16 N 1.33691 * 120.51215 * 0.02562 * 7 6 5 17 17 C 1.31352 * 121.42695 * 359.66780 * 16 7 6 18 18 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47279 * 300.00104 * 1 2 3 20 20 H 1.08999 * 109.47266 * 60.00158 * 1 2 3 21 21 H 1.08998 * 109.47781 * 239.99967 * 2 1 3 22 22 H 1.08999 * 109.47266 * 119.99842 * 2 1 3 23 23 H 1.07999 * 120.66713 * 359.97438 * 5 4 3 24 24 H 1.07998 * 120.39983 * 179.97438 * 6 5 4 25 25 H 0.97005 * 120.00279 * 180.02562 * 11 10 8 26 26 H 1.07996 * 119.61564 * 180.30618 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8912 2.8126 0.0000 6 6 5.2526 2.9536 0.0001 7 6 6.0622 1.8019 0.0001 8 6 7.4677 1.9338 0.0006 9 1 7.9180 2.9155 0.0007 10 6 8.2780 0.7921 0.0001 11 7 7.7328 -0.3966 -0.0005 12 14 10.1378 0.9666 0.0001 13 1 10.6307 1.0123 1.4002 14 1 10.7439 -0.1940 -0.7004 15 1 10.5173 2.2204 -0.6994 16 7 5.5103 0.5843 -0.0005 17 6 4.2067 0.4231 0.0054 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.2476 3.6798 -0.0012 24 1 5.7002 3.9364 -0.0007 25 1 8.2942 -1.1877 -0.0005 26 1 3.7922 -0.5741 0.0098 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222982.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:24 Heat of formation + Delta-G solvation = -31.076966 kcal Electronic energy + Delta-G solvation = -11507.608341 eV Core-core repulsion = 9357.701210 eV Total energy + Delta-G solvation = -2149.907132 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.74152 -38.63983 -35.32099 -33.01420 -32.23251 -30.88510 -27.16949 -24.97887 -23.33116 -22.46296 -19.45619 -18.68270 -17.50876 -16.80934 -16.50882 -15.93900 -14.91268 -14.42344 -14.39290 -13.98793 -13.50467 -13.34459 -12.92796 -12.76528 -12.70919 -12.45850 -12.21137 -11.77723 -11.69210 -11.02369 -10.22026 -9.55196 -9.13752 -8.29896 -6.39881 0.80041 1.05375 1.42350 1.53506 1.57345 2.24848 2.65859 2.82646 3.85759 4.01602 4.12556 4.21851 4.36337 4.45018 4.62848 4.80365 4.86009 5.00258 5.07634 5.23368 5.32220 5.48758 5.55949 5.96718 6.21737 6.61074 6.79480 6.99327 8.08521 8.47281 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.080435 B = 0.008841 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.024326 B = 3166.368624 C = 3493.946270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 O -0.336 6.336 4 C -0.075 4.075 5 C -0.083 4.083 6 C -0.249 4.249 7 C 0.199 3.801 8 C -0.470 4.470 9 H 0.093 0.907 10 C 0.022 3.978 11 N -0.765 5.765 12 Si 0.990 3.010 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.254 1.254 16 N -0.494 5.494 17 C 0.040 3.960 18 H 0.099 0.901 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.134 0.866 24 H 0.126 0.874 25 H 0.278 0.722 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 -0.072 0.003 5.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 O -0.251 6.251 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.272 4.272 7 C 0.073 3.927 8 C -0.502 4.502 9 H 0.111 0.889 10 C -0.199 4.199 11 N -0.388 5.388 12 Si 0.810 3.190 13 H -0.188 1.188 14 H -0.194 1.194 15 H -0.177 1.177 16 N -0.209 5.209 17 C -0.123 4.123 18 H 0.118 0.882 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.152 0.848 24 H 0.144 0.856 25 H 0.089 0.911 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.104 -0.877 -0.007 5.179 hybrid contribution 0.207 0.397 0.012 0.448 sum -4.896 -0.481 0.005 4.920 Atomic orbital electron populations 1.21745 0.90723 1.04006 1.03137 1.22822 0.97151 0.82088 1.00679 1.85782 1.18657 1.29563 1.91119 1.19773 0.82960 0.95237 1.14271 1.20338 0.94708 0.94765 1.00988 1.21618 0.93221 0.99256 1.13074 1.19069 0.95059 0.87227 0.91348 1.19909 0.90136 0.95016 1.45095 0.88907 1.27018 1.06244 0.94147 0.92471 1.70246 1.38798 0.99247 1.30500 0.85098 0.75181 0.79306 0.79416 1.18753 1.19421 1.17726 1.68674 1.09728 1.25284 1.17211 1.23168 0.90944 0.97321 1.00907 0.88203 0.91722 0.91719 0.93057 0.93045 0.84822 0.85626 0.91135 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 10.28 71.98 0.74 -2.40 15 2 C 0.05 1.52 5.46 71.98 0.39 1.91 15 3 O -0.34 -13.72 10.14 -90.03 -0.91 -14.63 15 4 C -0.07 -3.52 6.74 22.90 0.15 -3.37 15 5 C -0.08 -3.86 10.06 22.28 0.22 -3.64 15 6 C -0.25 -12.44 9.77 22.57 0.22 -12.22 15 7 C 0.20 11.34 6.55 40.20 0.26 11.60 15 8 C -0.47 -25.88 9.13 23.42 0.21 -25.67 15 9 H 0.09 4.71 7.85 -2.91 -0.02 4.68 15 10 C 0.02 1.13 5.50 85.28 0.47 1.60 15 11 N -0.76 -42.29 11.45 21.83 0.25 -42.04 15 12 Si 0.99 38.51 29.56 68.60 2.03 40.53 15 13 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 14 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 15 H -0.25 -9.42 7.11 99.48 0.71 -8.72 15 16 N -0.49 -28.69 7.85 -188.59 -1.48 -30.17 15 17 C 0.04 2.02 10.22 85.07 0.87 2.89 15 18 H 0.10 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.05 1.61 7.68 -2.39 -0.02 1.59 15 22 H 0.05 1.61 7.66 -2.39 -0.02 1.60 15 23 H 0.13 5.29 8.06 -2.91 -0.02 5.27 15 24 H 0.13 5.60 8.06 -2.91 -0.02 5.58 15 25 H 0.28 13.86 8.30 -92.70 -0.77 13.09 15 26 H 0.14 6.27 6.31 -2.91 -0.02 6.25 15 Total: -1.00 -64.90 232.35 4.60 -60.30 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.17 Total: 15.31 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 3.55 Total: -29.30 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.23 Total: -72.21 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.91 Total: -14.63 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.53 kcal Total: -64.90 4.60 -60.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222982.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.221 kcal (2) G-P(sol) polarization free energy of solvation -64.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds