Wall clock time and date at job start Mon Mar 30 2020 01:59:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30175 * 125.61513 * 2 1
4 4 C 1.34785 * 108.72326 * 180.26148 * 3 2 1
5 5 C 1.34078 * 107.59083 * 0.02562 * 4 3 2
6 6 O 1.33904 * 125.62054 * 180.31012 * 2 1 3
7 7 C 1.51232 * 110.51775 * 179.97438 * 5 4 3
8 8 C 1.54465 * 104.94572 * 343.21572 * 7 5 4
9 9 C 1.51318 * 142.00862 * 180.02562 * 4 3 2
10 10 H 1.09005 * 110.34384 * 315.66880 * 9 4 3
11 11 C 1.50696 * 110.34256 * 77.92315 * 9 4 3
12 12 H 1.08001 * 120.00160 * 118.54677 * 11 9 4
13 13 C 1.37881 * 120.00310 * 298.55148 * 11 9 4
14 14 N 1.31506 * 120.00299 * 180.02562 * 13 11 9
15 15 Si 1.86807 * 119.99711 * 359.97438 * 13 11 9
16 16 H 1.48503 * 109.46765 * 90.00401 * 15 13 11
17 17 H 1.48500 * 109.47001 * 210.00196 * 15 13 11
18 18 H 1.48493 * 109.47052 * 330.00542 * 15 13 11
19 19 H 1.08995 * 109.47444 * 179.71806 * 1 2 3
20 20 H 1.09004 * 109.47535 * 299.71495 * 1 2 3
21 21 H 1.09011 * 109.47367 * 59.71541 * 1 2 3
22 22 H 1.09001 * 110.34623 * 102.05672 * 7 5 4
23 23 H 1.09004 * 110.34476 * 224.31778 * 7 5 4
24 24 H 1.08995 * 110.94096 * 267.31189 * 8 7 5
25 25 H 1.09003 * 110.99500 * 143.60299 * 8 7 5
26 26 H 0.97006 * 120.00303 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2650 1.0583 0.0000
4 6 3.5547 0.6666 -0.0058
5 6 3.5711 -0.6741 -0.0100
6 8 2.2868 -1.0885 -0.0059
7 6 4.9938 -1.1868 -0.0173
8 6 5.8513 0.0237 -0.4480
9 6 4.9664 1.2114 -0.0092
10 1 5.0542 2.0320 -0.7212
11 6 5.3537 1.6715 1.3725
12 1 6.1845 1.2073 1.8832
13 6 4.6474 2.6850 1.9849
14 7 4.9857 3.0869 3.1905
15 14 3.2109 3.4883 1.1014
16 1 1.9594 2.7574 1.4252
17 1 3.0868 4.9013 1.5412
18 1 3.4444 3.4448 -0.3644
19 1 -0.3634 -1.0276 -0.0051
20 1 -0.3634 0.5094 0.8925
21 1 -0.3634 0.5183 -0.8875
22 1 5.2820 -1.5192 0.9800
23 1 5.0995 -2.0010 -0.7343
24 1 6.0034 0.0289 -1.5273
25 1 6.8057 0.0332 0.0784
26 1 4.4890 3.8002 3.6212
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261228017.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:59:31
Heat of formation + Delta-G solvation = 38.566549 kcal
Electronic energy + Delta-G solvation = -12173.202856 eV
Core-core repulsion = 10026.315694 eV
Total energy + Delta-G solvation = -2146.887162 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.084 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-42.63972 -36.77485 -33.72480 -32.32423 -30.62922 -28.31531 -25.89723 -23.68006
-21.28697 -20.15618 -19.43858 -17.04667 -16.13172 -15.59850 -14.17712 -14.06559
-13.73494 -13.47306 -12.81113 -12.49436 -12.35119 -11.78610 -11.58206 -11.37140
-10.83484 -10.52195 -10.27016 -9.73898 -9.61587 -9.36003 -9.18699 -8.35393
-7.54742 -6.05731 -4.11393 2.19457 3.01991 3.47433 3.62058 3.70178
3.84537 4.47457 4.64023 5.18418 5.29829 5.48036 5.59283 5.67471
5.71298 5.77596 5.97445 6.22870 6.35457 6.48756 6.60456 6.68927
6.91145 7.21364 7.29664 7.67827 8.43589 8.54986 8.91577 9.56276
11.03265
Molecular weight = 193.08amu
Principal moments of inertia in cm(-1)
A = 0.032167 B = 0.020704 C = 0.014206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.247307 B = 1352.069618 C = 1970.504185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 C 0.160 3.840
3 N -0.468 5.468
4 C 0.004 3.996
5 C -0.110 4.110
6 O -0.199 6.199
7 C -0.003 4.003
8 C -0.102 4.102
9 C 0.086 3.914
10 H 0.042 0.958
11 C -0.518 4.518
12 H 0.079 0.921
13 C 0.074 3.926
14 N -0.895 5.895
15 Si 0.905 3.095
16 H -0.255 1.255
17 H -0.311 1.311
18 H -0.269 1.269
19 H 0.081 0.919
20 H 0.090 0.910
21 H 0.089 0.911
22 H 0.086 0.914
23 H 0.067 0.933
24 H 0.061 0.939
25 H 0.088 0.912
26 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.252 -7.318 -7.181 11.519
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C -0.045 4.045
3 N -0.200 5.200
4 C -0.116 4.116
5 C -0.162 4.162
6 O -0.087 6.087
7 C -0.040 4.040
8 C -0.140 4.140
9 C 0.066 3.934
10 H 0.060 0.940
11 C -0.555 4.555
12 H 0.098 0.902
13 C -0.129 4.129
14 N -0.532 5.532
15 Si 0.735 3.265
16 H -0.181 1.181
17 H -0.240 1.240
18 H -0.194 1.194
19 H 0.100 0.900
20 H 0.108 0.892
21 H 0.108 0.892
22 H 0.104 0.896
23 H 0.085 0.915
24 H 0.079 0.921
25 H 0.107 0.893
26 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -5.547 -6.647 -7.024 11.149
hybrid contribution -0.776 -0.212 -0.107 0.812
sum -6.324 -6.859 -7.131 11.743
Atomic orbital electron populations
1.20074 0.82063 1.03750 1.04406 1.26197 0.96014 0.78627 1.03654
1.69914 1.02227 1.29842 1.18005 1.23532 0.94086 0.93784 1.00236
1.23778 0.84945 0.96574 1.10914 1.84042 1.15931 1.37372 1.71397
1.20496 0.82765 0.98426 1.02319 1.22395 0.98649 0.93282 0.99629
1.18423 0.82059 0.93903 0.98997 0.93981 1.20874 1.16921 1.19049
0.98678 0.90248 1.25099 0.97325 0.95966 0.94557 1.69935 1.40831
1.28661 1.13758 0.86390 0.83754 0.75937 0.80417 1.18075 1.23956
1.19406 0.90000 0.89178 0.89209 0.89567 0.91491 0.92052 0.89336
0.92643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.62 10.51 36.00 0.38 -0.25 15
2 C 0.16 3.29 8.34 -12.98 -0.11 3.18 15
3 N -0.47 -11.54 7.40 -7.18 -0.05 -11.59 15
4 C 0.00 0.09 5.73 -82.46 -0.47 -0.38 15
5 C -0.11 -2.44 8.24 -35.51 -0.29 -2.73 15
6 O -0.20 -4.20 10.78 4.98 0.05 -4.15 15
7 C 0.00 -0.05 6.78 -26.85 -0.18 -0.23 15
8 C -0.10 -1.92 6.65 -25.19 -0.17 -2.09 15
9 C 0.09 2.11 2.36 -91.85 -0.22 1.90 15
10 H 0.04 1.06 7.29 -51.93 -0.38 0.68 15
11 C -0.52 -14.88 9.13 -34.44 -0.31 -15.20 15
12 H 0.08 2.37 7.81 -52.49 -0.41 1.96 15
13 C 0.07 2.25 5.45 -17.82 -0.10 2.15 15
14 N -0.90 -28.26 13.96 55.43 0.77 -27.49 15
15 Si 0.90 24.77 23.99 -169.99 -4.08 20.69 15
16 H -0.26 -7.00 6.21 56.52 0.35 -6.65 15
17 H -0.31 -8.43 7.11 56.52 0.40 -8.03 15
18 H -0.27 -7.34 6.57 56.52 0.37 -6.97 15
19 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15
20 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15
21 H 0.09 1.06 8.14 -51.92 -0.42 0.64 15
22 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15
23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15
24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15
25 H 0.09 1.59 7.73 -51.93 -0.40 1.19 15
26 H 0.26 7.88 8.31 -40.82 -0.34 7.54 15
LS Contribution 219.20 15.07 3.30 3.30
Total: -1.00 -34.64 219.20 -4.42 -39.06
By element:
Atomic # 1 Polarization: -3.23 SS G_CDS: -2.94 Total: -6.18 kcal
Atomic # 6 Polarization: -12.18 SS G_CDS: -1.47 Total: -13.65 kcal
Atomic # 7 Polarization: -39.80 SS G_CDS: 0.72 Total: -39.08 kcal
Atomic # 8 Polarization: -4.20 SS G_CDS: 0.05 Total: -4.15 kcal
Atomic # 14 Polarization: 24.77 SS G_CDS: -4.08 Total: 20.69 kcal
Total LS contribution 3.30 Total: 3.30 kcal
Total: -34.64 -4.42 -39.06 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261228017.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.622 kcal
(2) G-P(sol) polarization free energy of solvation -34.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds