Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30175 * 125.61484 * 2 1 4 4 C 1.34778 * 108.72371 * 180.02562 * 3 2 1 5 5 C 1.34074 * 107.59208 * 0.02562 * 4 3 2 6 6 O 1.33905 * 125.62034 * 180.02562 * 2 1 3 7 7 C 1.51235 * 110.52392 * 179.78424 * 5 4 3 8 8 H 1.08995 * 110.35066 * 102.05567 * 7 5 4 9 9 C 1.50701 * 110.34830 * 224.32956 * 7 5 4 10 10 H 1.07999 * 120.00150 * 118.54084 * 9 7 5 11 11 C 1.37877 * 119.99802 * 298.54309 * 9 7 5 12 12 N 1.31515 * 120.00105 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 119.99897 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47376 * 59.99738 * 13 11 9 15 15 H 1.48503 * 109.47009 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.47012 * 299.99447 * 13 11 9 17 17 C 1.54345 * 105.00090 * 343.49498 * 7 5 4 18 18 C 1.51325 * 142.00982 * 180.02562 * 4 3 2 19 19 H 1.09000 * 109.47007 * 90.02683 * 1 2 3 20 20 H 1.08999 * 109.46723 * 210.02027 * 1 2 3 21 21 H 1.08994 * 109.46940 * 330.01975 * 1 2 3 22 22 H 0.96997 * 120.00107 * 180.02562 * 12 11 9 23 23 H 1.09007 * 110.77848 * 267.10412 * 17 7 5 24 24 H 1.08999 * 111.10671 * 143.43794 * 17 7 5 25 25 H 1.09001 * 110.33911 * 315.70446 * 18 4 3 26 26 H 1.09005 * 110.34100 * 77.85442 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2651 1.0583 0.0000 4 6 3.5548 0.6667 -0.0006 5 6 3.5712 -0.6740 -0.0015 6 8 2.2869 -1.0885 -0.0005 7 6 4.9939 -1.1868 -0.0075 8 1 5.2821 -1.5168 0.9905 9 6 5.1402 -2.3148 -0.9962 10 1 5.8172 -2.2160 -1.8318 11 6 4.4096 -3.4728 -0.8339 12 7 3.5855 -3.5932 0.1839 13 14 4.5914 -4.8711 -2.0590 14 1 6.0017 -5.3358 -2.0741 15 1 3.7047 -5.9946 -1.6629 16 1 4.2126 -4.3948 -3.4137 17 6 5.8528 0.0227 -0.4337 18 6 4.9666 1.2114 -0.0005 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8901 0.5135 22 1 3.0718 -4.4080 0.2982 23 1 6.0084 0.0254 -1.5126 24 1 6.8055 0.0335 0.0956 25 1 5.0565 2.0308 -0.7137 26 1 5.2429 1.5477 0.9988 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261237297.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = 25.596344 kcal Electronic energy + Delta-G solvation = -12055.826769 eV Core-core repulsion = 9908.377176 eV Total energy + Delta-G solvation = -2147.449592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.17235 -36.40062 -33.51631 -32.30596 -30.30197 -27.73405 -25.77473 -23.78488 -20.74570 -19.64643 -19.51502 -16.65853 -15.78955 -15.17585 -14.54335 -13.80760 -13.49191 -13.10786 -12.50532 -12.22437 -12.16259 -11.76684 -11.28184 -11.04267 -10.88082 -10.62234 -10.32688 -9.86981 -9.77760 -9.38161 -9.26344 -8.52358 -7.20757 -6.15530 -4.25098 2.76134 3.25682 3.30494 3.32733 3.65741 3.71620 4.33175 4.63587 5.17747 5.64278 5.68038 5.81509 5.82510 5.91589 6.05186 6.27384 6.44474 6.63097 6.67839 6.81145 7.17617 7.30337 7.41616 7.47668 7.76585 8.10656 8.77286 8.89561 9.41664 10.91412 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.036196 B = 0.015648 C = 0.011703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.382553 B = 1788.907472 C = 2392.027156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C 0.122 3.878 3 N -0.475 5.475 4 C -0.124 4.124 5 C 0.050 3.950 6 O -0.155 6.155 7 C 0.118 3.882 8 H 0.055 0.945 9 C -0.529 4.529 10 H 0.066 0.934 11 C 0.065 3.935 12 N -0.866 5.866 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.109 4.109 18 C -0.023 4.023 19 H 0.078 0.922 20 H 0.079 0.921 21 H 0.087 0.913 22 H 0.265 0.735 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 4.327 -0.162 4.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.084 4.084 3 N -0.206 5.206 4 C -0.243 4.243 5 C -0.006 4.006 6 O -0.038 6.038 7 C 0.100 3.900 8 H 0.073 0.927 9 C -0.566 4.566 10 H 0.084 0.916 11 C -0.140 4.140 12 N -0.501 5.501 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.202 1.202 17 C -0.147 4.147 18 C -0.061 4.061 19 H 0.096 0.904 20 H 0.098 0.902 21 H 0.106 0.894 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.895 4.744 -0.063 5.109 hybrid contribution 0.008 -1.472 -0.637 1.604 sum -1.887 3.272 -0.700 3.841 Atomic orbital electron populations 1.19928 0.82857 1.03721 1.03293 1.25954 0.96148 0.79574 1.06707 1.69518 1.01487 1.31046 1.18551 1.22221 0.93038 0.94360 1.14702 1.25238 0.85934 0.93987 0.95463 1.84423 1.16140 1.35213 1.68061 1.18190 0.80224 0.92871 0.98748 0.92690 1.21078 1.25790 0.98849 1.10844 0.91616 1.25075 0.94717 0.98660 0.95596 1.69938 1.24481 1.27212 1.28491 0.86559 0.78204 0.81327 0.81430 1.19903 1.21114 1.20153 1.22485 0.97300 0.93485 1.01395 1.20284 0.87041 0.97977 1.00833 0.90374 0.90204 0.89437 0.92480 0.91069 0.90904 0.91950 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.63 10.51 36.01 0.38 -0.26 15 2 C 0.12 2.76 8.34 -12.98 -0.11 2.66 15 3 N -0.47 -11.29 11.30 -7.18 -0.08 -11.37 15 4 C -0.12 -2.98 7.98 -82.46 -0.66 -3.64 15 5 C 0.05 1.32 6.72 -35.51 -0.24 1.09 15 6 O -0.15 -4.11 9.93 4.97 0.05 -4.06 15 7 C 0.12 2.98 2.81 -91.96 -0.26 2.72 15 8 H 0.06 1.45 8.14 -51.93 -0.42 1.03 15 9 C -0.53 -14.33 8.54 -34.44 -0.29 -14.62 15 10 H 0.07 1.71 7.63 -52.49 -0.40 1.31 15 11 C 0.06 1.78 5.32 -17.82 -0.09 1.69 15 12 N -0.87 -24.85 11.81 55.43 0.65 -24.19 15 13 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 17 C -0.11 -2.18 6.64 -25.26 -0.17 -2.34 15 18 C -0.02 -0.46 6.79 -26.81 -0.18 -0.64 15 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 23 H 0.07 1.41 7.79 -51.93 -0.40 1.00 15 24 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 LS Contribution 228.28 15.07 3.44 3.44 Total: -1.00 -31.51 228.28 -5.48 -36.99 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -2.90 Total: -3.49 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.62 Total: -13.35 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.57 Total: -35.56 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: 0.05 Total: -4.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.51 -5.48 -36.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237297.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.584 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds