Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30178 * 125.61447 * 2 1 4 4 C 1.34787 * 108.72067 * 179.97438 * 3 2 1 5 5 C 1.34078 * 107.58765 * 0.02562 * 4 3 2 6 6 O 1.33892 * 125.61724 * 179.97438 * 2 1 3 7 7 C 1.51236 * 110.51643 * 180.02562 * 5 4 3 8 8 H 1.08998 * 110.44220 * 257.91423 * 7 5 4 9 9 C 1.50700 * 110.34759 * 135.68494 * 7 5 4 10 10 H 1.08002 * 119.99770 * 244.49182 * 9 7 5 11 11 C 1.37871 * 120.00083 * 64.48861 * 9 7 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 C 1.54488 * 104.93645 * 16.82387 * 7 5 4 18 18 C 1.51318 * 142.00629 * 179.97438 * 4 3 2 19 19 H 1.09002 * 109.47306 * 90.01484 * 1 2 3 20 20 H 1.08996 * 109.46879 * 210.02175 * 1 2 3 21 21 H 1.09005 * 109.46864 * 330.01811 * 1 2 3 22 22 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 23 23 H 1.08997 * 110.95990 * 92.66237 * 17 7 5 24 24 H 1.08998 * 110.95426 * 216.35466 * 17 7 5 25 25 H 1.09002 * 110.34250 * 44.30714 * 18 4 3 26 26 H 1.08993 * 110.34368 * 282.04877 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2651 1.0583 0.0000 4 6 3.5548 0.6666 0.0006 5 6 3.5711 -0.6741 0.0004 6 8 2.2868 -1.0884 0.0005 7 6 4.9938 -1.1869 0.0016 8 1 5.2804 -1.5170 -0.9969 9 6 5.1430 -2.3159 0.9887 10 1 5.7852 -2.1995 1.8491 11 6 4.4596 -3.4973 0.7933 12 7 3.6779 -3.6392 -0.2548 13 14 4.6439 -4.8965 2.0171 14 1 3.8112 -6.0467 1.5830 15 1 6.0680 -5.3124 2.0825 16 1 4.1987 -4.4422 3.3590 17 6 5.8525 0.0221 0.4346 18 6 4.9665 1.2113 0.0005 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5136 22 1 3.5819 -2.9125 -0.8901 23 1 6.0075 0.0238 1.5135 24 1 6.8056 0.0327 -0.0942 25 1 5.0566 2.0306 0.7139 26 1 5.2435 1.5461 -0.9991 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237299.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = -2.366427 kcal Electronic energy + Delta-G solvation = -12086.814040 eV Core-core repulsion = 9938.151890 eV Total energy + Delta-G solvation = -2148.662149 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.22297 -38.39621 -35.73102 -34.32377 -31.89704 -29.28641 -27.61220 -25.59413 -22.70877 -21.79946 -21.50646 -19.03173 -17.87472 -17.12753 -15.76017 -15.66555 -15.42422 -15.19760 -14.43608 -13.87539 -13.62932 -13.38502 -13.10612 -12.88268 -12.62717 -12.27749 -12.06694 -11.92366 -11.61568 -11.37171 -10.83000 -10.56928 -9.19867 -8.71341 -6.46810 0.70308 1.50520 1.56832 1.70733 1.75271 1.78463 2.53021 2.88290 3.13611 3.86275 4.00881 4.21677 4.24852 4.48683 4.58605 4.64971 4.75974 4.82641 4.91897 5.07586 5.16967 5.26637 5.37652 5.60816 5.88486 6.10102 6.47611 6.87751 7.36316 8.67389 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.036495 B = 0.015495 C = 0.011686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.046382 B = 1806.630684 C = 2395.432569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C 0.142 3.858 3 N -0.492 5.492 4 C -0.101 4.101 5 C -0.045 4.045 6 O -0.202 6.202 7 C 0.095 3.905 8 H 0.025 0.975 9 C -0.616 4.616 10 H 0.062 0.938 11 C -0.030 4.030 12 N -0.913 5.913 13 Si 1.116 2.884 14 H -0.285 1.285 15 H -0.261 1.261 16 H -0.276 1.276 17 C -0.090 4.090 18 C -0.021 4.021 19 H 0.107 0.893 20 H 0.094 0.906 21 H 0.116 0.884 22 H 0.258 0.742 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 5.928 1.304 6.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.065 4.065 3 N -0.223 5.223 4 C -0.220 4.220 5 C -0.099 4.099 6 O -0.089 6.089 7 C 0.076 3.924 8 H 0.042 0.958 9 C -0.652 4.652 10 H 0.080 0.920 11 C -0.231 4.231 12 N -0.548 5.548 13 Si 0.937 3.063 14 H -0.210 1.210 15 H -0.185 1.185 16 H -0.202 1.202 17 C -0.127 4.127 18 C -0.059 4.059 19 H 0.125 0.875 20 H 0.113 0.887 21 H 0.134 0.866 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.123 0.877 25 H 0.109 0.891 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.065 4.969 1.617 5.618 hybrid contribution 0.419 0.749 -0.560 1.025 sum -1.646 5.718 1.057 6.043 Atomic orbital electron populations 1.20394 0.77949 1.05897 1.05789 1.27544 0.98418 0.78014 1.02482 1.69657 1.01372 1.31127 1.20146 1.22995 0.94779 0.93651 1.10581 1.25737 0.86206 0.96567 1.01407 1.84345 1.16898 1.38054 1.69601 1.18475 0.81077 0.95863 0.96985 0.95767 1.22369 1.31407 1.00390 1.11059 0.91998 1.27389 0.92320 1.03170 1.00224 1.70868 1.36281 1.35134 1.12507 0.82957 0.77613 0.72702 0.73066 1.21012 1.18534 1.20212 1.22405 0.97780 0.90730 1.01823 1.20506 0.83901 0.98240 1.03230 0.87484 0.88741 0.86557 0.93161 0.90929 0.87708 0.89057 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.22 10.51 71.24 0.75 -0.47 15 2 C 0.14 6.17 8.34 88.36 0.74 6.91 15 3 N -0.49 -22.41 11.30 -291.51 -3.29 -25.71 15 4 C -0.10 -4.73 7.98 41.35 0.33 -4.40 15 5 C -0.04 -2.36 6.25 24.91 0.16 -2.20 15 6 O -0.20 -10.78 9.85 -5.00 -0.05 -10.83 15 7 C 0.09 4.85 2.45 -11.61 -0.03 4.82 15 8 H 0.02 1.33 7.94 -2.39 -0.02 1.31 15 9 C -0.62 -34.40 8.51 25.60 0.22 -34.18 15 10 H 0.06 3.32 7.60 -2.91 -0.02 3.30 15 11 C -0.03 -1.74 5.34 84.65 0.45 -1.29 15 12 N -0.91 -56.30 13.18 21.45 0.28 -56.02 15 13 Si 1.12 49.97 29.90 68.60 2.05 52.03 15 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 17 C -0.09 -3.47 6.64 31.62 0.21 -3.27 15 18 C -0.02 -0.77 6.79 30.56 0.21 -0.56 15 19 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 20 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 21 H 0.12 2.68 8.14 -2.38 -0.02 2.66 15 22 H 0.26 16.32 5.81 -92.70 -0.54 15.78 15 23 H 0.07 2.80 7.77 -2.39 -0.02 2.78 15 24 H 0.10 3.36 8.14 -2.39 -0.02 3.34 15 25 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 26 H 0.09 2.99 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -71.70 226.33 3.43 -68.27 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.41 Total: 6.90 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 3.03 Total: -34.64 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -3.01 Total: -81.73 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.05 Total: -10.83 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.03 kcal Total: -71.70 3.43 -68.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237299.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.905 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds