Wall clock time and date at job start Mon Mar 30 2020 01:59:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30178 * 125.61447 * 2 1
4 4 C 1.34787 * 108.72067 * 179.97438 * 3 2 1
5 5 C 1.34078 * 107.58765 * 0.02562 * 4 3 2
6 6 O 1.33892 * 125.61724 * 179.97438 * 2 1 3
7 7 C 1.51236 * 110.51643 * 180.02562 * 5 4 3
8 8 H 1.08998 * 110.44220 * 257.91423 * 7 5 4
9 9 C 1.50700 * 110.34759 * 135.68494 * 7 5 4
10 10 H 1.08002 * 119.99770 * 244.49182 * 9 7 5
11 11 C 1.37871 * 120.00083 * 64.48861 * 9 7 5
12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 7
13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 7
14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9
15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9
16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9
17 17 C 1.54488 * 104.93645 * 16.82387 * 7 5 4
18 18 C 1.51318 * 142.00629 * 179.97438 * 4 3 2
19 19 H 1.09002 * 109.47306 * 90.01484 * 1 2 3
20 20 H 1.08996 * 109.46879 * 210.02175 * 1 2 3
21 21 H 1.09005 * 109.46864 * 330.01811 * 1 2 3
22 22 H 0.97005 * 119.99661 * 359.97438 * 12 11 9
23 23 H 1.08997 * 110.95990 * 92.66237 * 17 7 5
24 24 H 1.08998 * 110.95426 * 216.35466 * 17 7 5
25 25 H 1.09002 * 110.34250 * 44.30714 * 18 4 3
26 26 H 1.08993 * 110.34368 * 282.04877 * 18 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2651 1.0583 0.0000
4 6 3.5548 0.6666 0.0006
5 6 3.5711 -0.6741 0.0004
6 8 2.2868 -1.0884 0.0005
7 6 4.9938 -1.1869 0.0016
8 1 5.2804 -1.5170 -0.9969
9 6 5.1430 -2.3159 0.9887
10 1 5.7852 -2.1995 1.8491
11 6 4.4596 -3.4973 0.7933
12 7 3.6779 -3.6392 -0.2548
13 14 4.6439 -4.8965 2.0171
14 1 3.8112 -6.0467 1.5830
15 1 6.0680 -5.3124 2.0825
16 1 4.1987 -4.4422 3.3590
17 6 5.8525 0.0221 0.4346
18 6 4.9665 1.2113 0.0005
19 1 -0.3634 -0.0003 -1.0277
20 1 -0.3633 -0.8898 0.5142
21 1 -0.3633 0.8902 0.5136
22 1 3.5819 -2.9125 -0.8901
23 1 6.0075 0.0238 1.5135
24 1 6.8056 0.0327 -0.0942
25 1 5.0566 2.0306 0.7139
26 1 5.2435 1.5461 -0.9991
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261237299.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:59:35
Heat of formation + Delta-G solvation = -2.366427 kcal
Electronic energy + Delta-G solvation = -12086.814040 eV
Core-core repulsion = 9938.151890 eV
Total energy + Delta-G solvation = -2148.662149 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.084 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-44.22297 -38.39621 -35.73102 -34.32377 -31.89704 -29.28641 -27.61220 -25.59413
-22.70877 -21.79946 -21.50646 -19.03173 -17.87472 -17.12753 -15.76017 -15.66555
-15.42422 -15.19760 -14.43608 -13.87539 -13.62932 -13.38502 -13.10612 -12.88268
-12.62717 -12.27749 -12.06694 -11.92366 -11.61568 -11.37171 -10.83000 -10.56928
-9.19867 -8.71341 -6.46810 0.70308 1.50520 1.56832 1.70733 1.75271
1.78463 2.53021 2.88290 3.13611 3.86275 4.00881 4.21677 4.24852
4.48683 4.58605 4.64971 4.75974 4.82641 4.91897 5.07586 5.16967
5.26637 5.37652 5.60816 5.88486 6.10102 6.47611 6.87751 7.36316
8.67389
Molecular weight = 193.08amu
Principal moments of inertia in cm(-1)
A = 0.036495 B = 0.015495 C = 0.011686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 767.046382 B = 1806.630684 C = 2395.432569
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 C 0.142 3.858
3 N -0.492 5.492
4 C -0.101 4.101
5 C -0.045 4.045
6 O -0.202 6.202
7 C 0.095 3.905
8 H 0.025 0.975
9 C -0.616 4.616
10 H 0.062 0.938
11 C -0.030 4.030
12 N -0.913 5.913
13 Si 1.116 2.884
14 H -0.285 1.285
15 H -0.261 1.261
16 H -0.276 1.276
17 C -0.090 4.090
18 C -0.021 4.021
19 H 0.107 0.893
20 H 0.094 0.906
21 H 0.116 0.884
22 H 0.258 0.742
23 H 0.072 0.928
24 H 0.105 0.895
25 H 0.091 0.909
26 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.321 5.928 1.304 6.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C -0.065 4.065
3 N -0.223 5.223
4 C -0.220 4.220
5 C -0.099 4.099
6 O -0.089 6.089
7 C 0.076 3.924
8 H 0.042 0.958
9 C -0.652 4.652
10 H 0.080 0.920
11 C -0.231 4.231
12 N -0.548 5.548
13 Si 0.937 3.063
14 H -0.210 1.210
15 H -0.185 1.185
16 H -0.202 1.202
17 C -0.127 4.127
18 C -0.059 4.059
19 H 0.125 0.875
20 H 0.113 0.887
21 H 0.134 0.866
22 H 0.068 0.932
23 H 0.091 0.909
24 H 0.123 0.877
25 H 0.109 0.891
26 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -2.065 4.969 1.617 5.618
hybrid contribution 0.419 0.749 -0.560 1.025
sum -1.646 5.718 1.057 6.043
Atomic orbital electron populations
1.20394 0.77949 1.05897 1.05789 1.27544 0.98418 0.78014 1.02482
1.69657 1.01372 1.31127 1.20146 1.22995 0.94779 0.93651 1.10581
1.25737 0.86206 0.96567 1.01407 1.84345 1.16898 1.38054 1.69601
1.18475 0.81077 0.95863 0.96985 0.95767 1.22369 1.31407 1.00390
1.11059 0.91998 1.27389 0.92320 1.03170 1.00224 1.70868 1.36281
1.35134 1.12507 0.82957 0.77613 0.72702 0.73066 1.21012 1.18534
1.20212 1.22405 0.97780 0.90730 1.01823 1.20506 0.83901 0.98240
1.03230 0.87484 0.88741 0.86557 0.93161 0.90929 0.87708 0.89057
0.88761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.04 -1.22 10.51 71.24 0.75 -0.47 15
2 C 0.14 6.17 8.34 88.36 0.74 6.91 15
3 N -0.49 -22.41 11.30 -291.51 -3.29 -25.71 15
4 C -0.10 -4.73 7.98 41.35 0.33 -4.40 15
5 C -0.04 -2.36 6.25 24.91 0.16 -2.20 15
6 O -0.20 -10.78 9.85 -5.00 -0.05 -10.83 15
7 C 0.09 4.85 2.45 -11.61 -0.03 4.82 15
8 H 0.02 1.33 7.94 -2.39 -0.02 1.31 15
9 C -0.62 -34.40 8.51 25.60 0.22 -34.18 15
10 H 0.06 3.32 7.60 -2.91 -0.02 3.30 15
11 C -0.03 -1.74 5.34 84.65 0.45 -1.29 15
12 N -0.91 -56.30 13.18 21.45 0.28 -56.02 15
13 Si 1.12 49.97 29.90 68.60 2.05 52.03 15
14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15
15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15
16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15
17 C -0.09 -3.47 6.64 31.62 0.21 -3.27 15
18 C -0.02 -0.77 6.79 30.56 0.21 -0.56 15
19 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15
20 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15
21 H 0.12 2.68 8.14 -2.38 -0.02 2.66 15
22 H 0.26 16.32 5.81 -92.70 -0.54 15.78 15
23 H 0.07 2.80 7.77 -2.39 -0.02 2.78 15
24 H 0.10 3.36 8.14 -2.39 -0.02 3.34 15
25 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15
26 H 0.09 2.99 8.14 -2.39 -0.02 2.98 15
Total: -1.00 -71.70 226.33 3.43 -68.27
By element:
Atomic # 1 Polarization: 5.49 SS G_CDS: 1.41 Total: 6.90 kcal
Atomic # 6 Polarization: -37.67 SS G_CDS: 3.03 Total: -34.64 kcal
Atomic # 7 Polarization: -78.71 SS G_CDS: -3.01 Total: -81.73 kcal
Atomic # 8 Polarization: -10.78 SS G_CDS: -0.05 Total: -10.83 kcal
Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.03 kcal
Total: -71.70 3.43 -68.27 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261237299.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.905 kcal
(2) G-P(sol) polarization free energy of solvation -71.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds