Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35454 * 128.00442 * 265.01839 * 10 9 7 12 12 O 1.34032 * 106.44374 * 179.97438 * 11 10 9 13 13 N 1.20919 * 111.57139 * 0.02562 * 12 11 10 14 14 C 1.30175 * 111.60282 * 359.74320 * 13 12 11 15 15 C 1.50701 * 126.80553 * 180.25281 * 14 13 12 16 16 C 1.52997 * 117.49668 * 8.91171 * 15 14 13 17 17 C 1.53004 * 117.49752 * 300.25336 * 15 14 13 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08004 * 126.77609 * 359.96788 * 11 10 9 22 22 H 1.08998 * 115.54962 * 154.58233 * 15 14 13 23 23 H 1.08999 * 117.50180 * 0.02562 * 16 15 14 24 24 H 1.09001 * 117.50147 * 145.02259 * 16 15 14 25 25 H 1.08991 * 117.50129 * 214.97832 * 17 15 14 26 26 H 1.09005 * 117.49566 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.7018 -4.3341 -1.0767 12 8 3.5448 -5.2555 -0.5901 13 7 3.6245 -5.1930 0.6149 14 6 2.8732 -4.2451 1.0963 15 6 2.7175 -3.8650 2.5462 16 6 3.6667 -4.5174 3.5533 17 6 2.1953 -4.9367 3.5053 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.4485 -4.1730 -2.1142 22 1 2.4176 -2.8338 2.7323 23 1 4.4041 -5.2211 3.1672 24 1 3.9910 -3.9154 4.4023 25 1 1.5522 -4.6105 4.3226 26 1 1.9640 -5.9165 3.0874 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261703.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = 54.790226 kcal Electronic energy + Delta-G solvation = -11630.071492 eV Core-core repulsion = 9483.887841 eV Total energy + Delta-G solvation = -2146.183651 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.72486 -38.44887 -36.00390 -34.18590 -32.61942 -29.78442 -25.72782 -25.28182 -23.33367 -22.14601 -21.02508 -18.75221 -18.35172 -18.14460 -16.63963 -16.36343 -15.71401 -14.57871 -14.45163 -14.20967 -13.60277 -12.91502 -12.82190 -12.59483 -12.48852 -12.31675 -12.14158 -11.84708 -11.64434 -11.29464 -10.60716 -10.32111 -10.04375 -8.22077 -6.33724 0.67928 1.35351 1.39505 1.43780 1.54324 2.40652 2.51900 2.93947 3.10248 3.27116 3.59486 3.95036 4.13217 4.30031 4.44743 4.61174 4.68323 4.84854 4.99378 5.17259 5.19498 5.25398 5.38227 5.56390 5.72313 6.15340 6.77014 7.34989 7.42200 8.88171 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.037023 B = 0.011262 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.095585 B = 2485.627520 C = 2826.695694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.049 0.951 9 C 0.098 3.902 10 C -0.182 4.182 11 C -0.070 4.070 12 O 0.089 5.911 13 N -0.392 5.392 14 C 0.040 3.960 15 C -0.110 4.110 16 C -0.151 4.151 17 C -0.148 4.148 18 H 0.267 0.733 19 H 0.010 0.990 20 H 0.017 0.983 21 H 0.246 0.754 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -6.597 2.775 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.067 0.933 9 C 0.061 3.939 10 C -0.186 4.186 11 C -0.151 4.151 12 O 0.025 5.975 13 N -0.098 5.098 14 C -0.118 4.118 15 C -0.129 4.129 16 C -0.188 4.188 17 C -0.186 4.186 18 H 0.076 0.924 19 H 0.028 0.972 20 H 0.035 0.965 21 H 0.262 0.738 22 H 0.132 0.868 23 H 0.111 0.889 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.210 -7.396 3.295 9.628 hybrid contribution -0.474 1.656 -0.411 1.771 sum 4.736 -5.740 2.884 7.981 Atomic orbital electron populations 1.70061 1.07458 1.27958 1.51085 1.25806 0.95680 1.02715 0.94539 0.85456 0.78786 0.79117 0.78056 1.19392 1.20016 1.20185 1.21313 0.92812 0.91186 1.51196 0.93300 1.17336 0.91453 0.88537 0.96616 1.21915 1.03499 1.01014 0.92196 1.26166 0.94884 0.91923 1.02088 1.84660 1.50806 1.46604 1.15451 1.73598 1.22313 1.21636 0.92286 1.22832 0.96620 0.94515 0.97799 1.20286 1.09072 0.99264 0.84307 1.23042 0.93050 1.02750 0.99986 1.23071 0.97387 0.97715 1.00462 0.92448 0.97184 0.96458 0.73778 0.86777 0.88889 0.86046 0.86003 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.80 13.29 21.45 0.28 -53.52 15 2 C 0.01 0.63 5.46 84.66 0.46 1.09 15 3 Si 0.96 43.22 29.54 68.60 2.03 45.24 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 7 C -0.53 -29.22 9.09 25.60 0.23 -28.98 15 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 15 9 C 0.10 5.06 5.47 29.10 0.16 5.22 15 10 C -0.18 -8.03 5.51 -19.74 -0.11 -8.14 15 11 C -0.07 -2.54 12.26 67.18 0.82 -1.72 15 12 O 0.09 3.25 11.20 71.71 0.80 4.06 15 13 N -0.39 -15.45 11.73 -49.57 -0.58 -16.03 15 14 C 0.04 1.65 6.83 43.58 0.30 1.95 15 15 C -0.11 -4.04 6.21 -11.54 -0.07 -4.11 15 16 C -0.15 -4.32 10.16 30.62 0.31 -4.01 15 17 C -0.15 -4.26 10.24 30.62 0.31 -3.94 15 18 H 0.27 14.50 8.31 -92.70 -0.77 13.73 15 19 H 0.01 0.55 8.14 -2.38 -0.02 0.53 15 20 H 0.02 0.92 8.14 -2.39 -0.02 0.90 15 21 H 0.25 6.72 8.06 -2.91 -0.02 6.69 15 22 H 0.11 4.57 8.14 -2.39 -0.02 4.55 15 23 H 0.09 2.74 7.94 -2.39 -0.02 2.72 15 24 H 0.12 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.12 2.91 8.14 -2.39 -0.02 2.89 15 26 H 0.09 2.61 8.14 -2.38 -0.02 2.59 15 Total: -1.00 -62.69 239.20 6.12 -56.57 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.17 Total: 6.32 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 2.42 Total: -42.64 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -0.30 Total: -69.55 kcal Atomic # 8 Polarization: 3.25 SS G_CDS: 0.80 Total: 4.06 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -62.69 6.12 -56.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261703.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.361 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds