Wall clock time and date at job start Mon Mar 30 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35762 * 119.62393 * 2 1 4 4 C 1.50701 * 119.64754 * 359.95215 * 3 2 1 5 5 C 1.50700 * 109.46903 * 274.99912 * 4 3 2 6 6 H 1.07999 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99872 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00287 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46967 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47268 * 119.99985 * 9 7 5 12 12 H 1.48503 * 109.47539 * 240.00479 * 9 7 5 13 13 C 1.35354 * 120.70391 * 179.97438 * 3 2 1 14 14 C 1.40197 * 119.94534 * 359.97438 * 13 3 2 15 15 C 1.36396 * 119.26438 * 359.73962 * 14 13 3 16 16 C 1.34662 * 119.62692 * 179.97438 * 2 1 3 17 17 O 1.22063 * 119.98236 * 0.02562 * 16 2 1 18 18 H 1.09003 * 109.47123 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47150 * 300.02528 * 1 2 3 20 20 H 1.09003 * 109.46782 * 60.03036 * 1 2 3 21 21 H 1.08997 * 109.47280 * 34.99895 * 4 3 2 22 22 H 1.09009 * 109.47026 * 155.00423 * 4 3 2 23 23 H 0.97002 * 120.00084 * 179.97438 * 8 7 5 24 24 H 1.07999 * 120.02826 * 179.97438 * 13 3 2 25 25 H 1.08001 * 120.36404 * 180.02562 * 14 13 3 26 26 H 1.08004 * 120.34796 * 180.25117 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1802 0.0000 4 6 1.3660 2.4756 -0.0011 5 6 1.0040 2.8435 -1.4169 6 1 1.3013 2.2031 -2.2342 7 6 0.2922 3.9971 -1.6689 8 7 -0.0704 4.7767 -0.6737 9 14 -0.1573 4.4529 -3.4238 10 1 0.3632 3.4179 -4.3528 11 1 -1.6346 4.5339 -3.5513 12 1 0.4418 5.7689 -3.7624 13 6 3.4894 1.2057 0.0005 14 6 4.2120 0.0043 0.0016 15 6 3.5360 -1.1804 0.0075 16 6 2.1307 -1.1706 0.0005 17 8 1.5132 -2.2235 0.0005 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5142 0.8897 20 1 -0.3633 0.5134 -0.8903 21 1 0.4563 2.3580 0.5877 22 1 1.9808 3.2641 0.4333 23 1 -0.5708 5.5885 -0.8510 24 1 4.0121 2.1507 0.0001 25 1 5.2919 0.0167 0.0024 26 1 4.0751 -2.1162 0.0126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:42 Heat of formation + Delta-G solvation = -16.066217 kcal Electronic energy + Delta-G solvation = -11780.853140 eV Core-core repulsion = 9631.596923 eV Total energy + Delta-G solvation = -2149.256217 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.71091 -36.59343 -34.14449 -33.22432 -30.61074 -27.37277 -26.95988 -23.94979 -21.99797 -21.12627 -16.80618 -16.71493 -16.52204 -15.43323 -15.20723 -14.58248 -13.99512 -12.96995 -12.76543 -12.41168 -12.24963 -11.95630 -11.46851 -11.38197 -11.02878 -10.79162 -10.68551 -10.08569 -9.69956 -9.33523 -9.28887 -8.66966 -7.24544 -6.29253 -4.36335 1.50376 2.51711 3.16653 3.25701 3.30124 3.34557 4.19753 4.32044 5.05980 5.23958 5.44470 5.49037 5.81701 5.88328 5.93691 6.06362 6.27862 6.55016 6.72987 6.85920 7.09148 7.15257 7.22302 7.64238 7.85544 7.93623 8.61014 8.67778 9.29987 10.79862 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049642 B = 0.010741 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.905645 B = 2606.269247 C = 2769.637424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.486 5.486 3 C 0.219 3.781 4 C 0.040 3.960 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.899 3.101 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 C -0.267 4.267 14 C 0.001 3.999 15 C -0.291 4.291 16 C 0.510 3.490 17 O -0.581 6.581 18 H 0.089 0.911 19 H 0.075 0.925 20 H 0.092 0.908 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.266 0.734 24 H 0.140 0.860 25 H 0.124 0.876 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -3.721 1.184 5.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.195 5.195 3 C 0.109 3.891 4 C 0.003 3.997 5 C -0.561 4.561 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.727 3.273 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.289 4.289 14 C -0.022 4.022 15 C -0.313 4.313 16 C 0.315 3.685 17 O -0.468 6.468 18 H 0.108 0.892 19 H 0.094 0.906 20 H 0.110 0.890 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.157 0.843 25 H 0.142 0.858 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.540 -4.230 1.230 5.651 hybrid contribution -0.141 0.468 -0.941 1.060 sum 3.399 -3.762 0.290 5.078 Atomic orbital electron populations 1.22143 0.77555 1.04276 1.04491 1.45361 1.09518 1.06505 1.58089 1.21634 0.93382 0.88395 0.85739 1.18729 0.95501 0.86302 0.99203 1.20889 1.36367 1.07867 0.90935 0.92099 1.24971 0.95248 0.95900 0.97676 1.69941 1.37851 1.13639 1.31064 0.86403 0.78304 0.78624 0.84009 1.19549 1.20713 1.20646 1.20386 0.92084 0.98943 1.17509 1.21374 0.99892 0.92265 0.88635 1.21773 0.92777 0.99367 1.17360 1.17146 0.89379 0.82728 0.79266 1.90853 1.70304 1.29869 1.55776 0.89222 0.90593 0.88972 0.93991 0.92966 0.92438 0.84253 0.85764 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 9.41 59.85 0.56 1.61 15 2 N -0.49 -9.87 2.99 -122.54 -0.37 -10.23 15 3 C 0.22 4.46 5.84 -81.88 -0.48 3.98 15 4 C 0.04 0.91 4.54 -29.03 -0.13 0.78 15 5 C -0.52 -13.19 8.50 -34.44 -0.29 -13.48 15 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 15 8 N -0.89 -23.96 13.29 55.43 0.74 -23.22 15 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 15 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 13 C -0.27 -4.81 9.60 -39.87 -0.38 -5.19 15 14 C 0.00 0.01 10.10 -39.51 -0.40 -0.39 15 15 C -0.29 -5.19 9.99 -39.38 -0.39 -5.58 15 16 C 0.51 10.67 7.41 -15.45 -0.11 10.55 15 17 O -0.58 -13.53 16.39 4.86 0.08 -13.45 15 18 H 0.09 1.60 6.86 -51.93 -0.36 1.24 15 19 H 0.08 1.29 7.36 -51.93 -0.38 0.91 15 20 H 0.09 1.75 7.52 -51.93 -0.39 1.36 15 21 H 0.04 0.98 6.67 -51.93 -0.35 0.64 15 22 H 0.05 1.23 8.02 -51.92 -0.42 0.81 15 23 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 24 H 0.14 2.31 8.03 -52.49 -0.42 1.89 15 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.14 2.16 8.06 -52.48 -0.42 1.73 15 LS Contribution 230.98 15.07 3.48 3.48 Total: -1.00 -29.01 230.98 -5.52 -34.53 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.70 Total: -0.03 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.73 Total: -6.14 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.37 Total: -33.46 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.01 -5.52 -34.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.460 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds