Wall clock time and date at job start Mon Mar 30 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35762 * 119.62393 * 2 1 4 4 C 1.50701 * 119.64754 * 359.95215 * 3 2 1 5 5 C 1.50700 * 109.46903 * 274.99912 * 4 3 2 6 6 H 1.07999 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99872 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00287 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46967 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47268 * 119.99985 * 9 7 5 12 12 H 1.48503 * 109.47539 * 240.00479 * 9 7 5 13 13 C 1.35354 * 120.70391 * 179.97438 * 3 2 1 14 14 C 1.40197 * 119.94534 * 359.97438 * 13 3 2 15 15 C 1.36396 * 119.26438 * 359.73962 * 14 13 3 16 16 C 1.34662 * 119.62692 * 179.97438 * 2 1 3 17 17 O 1.22063 * 119.98236 * 0.02562 * 16 2 1 18 18 H 1.09003 * 109.47123 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47150 * 300.02528 * 1 2 3 20 20 H 1.09003 * 109.46782 * 60.03036 * 1 2 3 21 21 H 1.08997 * 109.47280 * 34.99895 * 4 3 2 22 22 H 1.09009 * 109.47026 * 155.00423 * 4 3 2 23 23 H 0.97002 * 120.00084 * 179.97438 * 8 7 5 24 24 H 1.07999 * 120.02826 * 179.97438 * 13 3 2 25 25 H 1.08001 * 120.36404 * 180.02562 * 14 13 3 26 26 H 1.08004 * 120.34796 * 180.25117 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1802 0.0000 4 6 1.3660 2.4756 -0.0011 5 6 1.0040 2.8435 -1.4169 6 1 1.3013 2.2031 -2.2342 7 6 0.2922 3.9971 -1.6689 8 7 -0.0704 4.7767 -0.6737 9 14 -0.1573 4.4529 -3.4238 10 1 0.3632 3.4179 -4.3528 11 1 -1.6346 4.5339 -3.5513 12 1 0.4418 5.7689 -3.7624 13 6 3.4894 1.2057 0.0005 14 6 4.2120 0.0043 0.0016 15 6 3.5360 -1.1804 0.0075 16 6 2.1307 -1.1706 0.0005 17 8 1.5132 -2.2235 0.0005 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5142 0.8897 20 1 -0.3633 0.5134 -0.8903 21 1 0.4563 2.3580 0.5877 22 1 1.9808 3.2641 0.4333 23 1 -0.5708 5.5885 -0.8510 24 1 4.0121 2.1507 0.0001 25 1 5.2919 0.0167 0.0024 26 1 4.0751 -2.1162 0.0126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:42 Heat of formation + Delta-G solvation = -33.413925 kcal Electronic energy + Delta-G solvation = -11781.605393 eV Core-core repulsion = 9631.596923 eV Total energy + Delta-G solvation = -2150.008470 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.24769 -38.22192 -35.65624 -35.06164 -32.34326 -29.04417 -28.47446 -25.74334 -23.51047 -22.73655 -18.69365 -18.25277 -18.07306 -17.02439 -16.84848 -16.35590 -15.35556 -14.60639 -14.52976 -14.06457 -13.93222 -13.46996 -13.15206 -12.95387 -12.70398 -12.47901 -12.38172 -11.88045 -11.47671 -10.91050 -10.85375 -10.64120 -8.80296 -8.24995 -6.38842 0.06247 0.99153 1.40032 1.44078 1.54213 1.83110 2.37770 2.79102 3.07813 3.84588 3.88157 4.14392 4.36916 4.40913 4.50878 4.63672 4.76642 5.09502 5.20329 5.28862 5.42279 5.49005 5.65946 5.72045 6.02270 6.30661 6.70456 7.04496 7.30707 8.82959 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049642 B = 0.010741 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.905645 B = 2606.269247 C = 2769.637424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.490 5.490 3 C 0.189 3.811 4 C 0.050 3.950 5 C -0.529 4.529 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.919 5.919 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.276 1.276 13 C -0.252 4.252 14 C 0.019 3.981 15 C -0.293 4.293 16 C 0.492 3.508 17 O -0.618 6.618 18 H 0.092 0.908 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.028 0.972 22 H 0.042 0.958 23 H 0.268 0.732 24 H 0.156 0.844 25 H 0.176 0.824 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -3.802 0.675 6.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.198 5.198 3 C 0.079 3.921 4 C 0.013 3.987 5 C -0.567 4.567 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.558 5.558 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.201 1.201 13 C -0.274 4.274 14 C -0.002 4.002 15 C -0.314 4.314 16 C 0.299 3.701 17 O -0.508 6.508 18 H 0.111 0.889 19 H 0.103 0.897 20 H 0.100 0.900 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.174 0.826 25 H 0.193 0.807 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.153 -4.292 0.721 6.745 hybrid contribution -0.576 0.488 -0.751 1.065 sum 4.577 -3.804 -0.030 5.952 Atomic orbital electron populations 1.22127 0.77357 1.04381 1.04399 1.45397 1.09943 1.06508 1.57979 1.21422 0.94246 0.87372 0.89032 1.18448 0.95061 0.87490 0.97700 1.21107 1.36024 1.07626 0.91959 0.92915 1.25684 0.95279 0.95968 1.01039 1.70025 1.38762 1.14177 1.32822 0.85492 0.78018 0.78299 0.79837 1.19476 1.20413 1.20111 1.20779 0.91230 1.00776 1.14618 1.21768 1.02210 0.90244 0.86025 1.22043 0.91291 1.01271 1.16830 1.17729 0.90714 0.82256 0.79432 1.90826 1.71164 1.30824 1.57965 0.88947 0.89678 0.90038 0.95421 0.94026 0.92259 0.82624 0.80659 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.21 9.41 127.77 1.20 3.41 15 2 N -0.49 -19.71 2.99 -659.75 -1.97 -21.68 15 3 C 0.19 7.52 5.84 41.29 0.24 7.76 15 4 C 0.05 2.31 4.54 29.10 0.13 2.44 15 5 C -0.53 -26.71 8.50 25.60 0.22 -26.49 15 6 H 0.05 2.70 7.74 -2.91 -0.02 2.68 15 7 C 0.02 1.05 5.46 84.65 0.46 1.51 15 8 N -0.92 -49.80 13.29 21.45 0.28 -49.52 15 9 Si 0.96 40.92 29.54 68.60 2.03 42.94 15 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 15 12 H -0.28 -11.48 7.11 99.48 0.71 -10.78 15 13 C -0.25 -8.35 9.60 22.08 0.21 -8.14 15 14 C 0.02 0.53 10.10 22.32 0.23 0.75 15 15 C -0.29 -9.58 9.99 22.40 0.22 -9.35 15 16 C 0.49 20.10 7.41 84.82 0.63 20.72 15 17 O -0.62 -28.68 16.39 -5.52 -0.09 -28.77 15 18 H 0.09 3.37 6.86 -2.39 -0.02 3.35 15 19 H 0.08 2.96 7.36 -2.39 -0.02 2.95 15 20 H 0.08 3.19 7.52 -2.39 -0.02 3.17 15 21 H 0.03 1.33 6.67 -2.39 -0.02 1.31 15 22 H 0.04 1.97 8.02 -2.38 -0.02 1.95 15 23 H 0.27 13.73 8.31 -92.71 -0.77 12.96 15 24 H 0.16 4.63 8.03 -2.91 -0.02 4.61 15 25 H 0.18 3.11 8.06 -2.91 -0.02 3.08 15 26 H 0.16 4.43 8.06 -2.91 -0.02 4.40 15 Total: -1.00 -61.38 230.98 4.97 -56.41 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.17 Total: 8.00 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 3.54 Total: -7.39 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -1.68 Total: -71.20 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.09 Total: -28.77 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -61.38 4.97 -56.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.998 kcal (2) G-P(sol) polarization free energy of solvation -61.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds