Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47195 * 2 1 4 4 C 1.34443 * 119.14207 * 270.30549 * 3 2 1 5 5 C 1.39573 * 120.19516 * 180.26313 * 4 3 2 6 6 C 1.41261 * 120.63438 * 179.71385 * 5 4 3 7 7 H 1.07995 * 120.00334 * 330.21200 * 6 5 4 8 8 C 1.39749 * 119.99910 * 149.94235 * 6 5 4 9 9 N 1.30976 * 120.00370 * 162.15973 * 8 6 5 10 10 Si 1.86804 * 119.99899 * 342.15857 * 8 6 5 11 11 H 1.48495 * 109.47286 * 95.44722 * 10 8 6 12 12 H 1.48498 * 109.47180 * 215.44937 * 10 8 6 13 13 H 1.48506 * 109.47065 * 335.44795 * 10 8 6 14 14 C 1.46611 * 118.72339 * 359.44311 * 5 4 3 15 15 C 1.35832 * 118.41909 * 0.26772 * 14 5 4 16 16 C 1.34309 * 119.13597 * 89.99896 * 3 2 1 17 17 O 1.21932 * 119.33691 * 0.04722 * 16 3 2 18 18 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47249 * 300.00315 * 1 2 3 20 20 H 1.08999 * 109.46935 * 59.99843 * 1 2 3 21 21 H 1.09001 * 109.46759 * 239.99878 * 2 1 3 22 22 H 1.09006 * 109.46607 * 120.00756 * 2 1 3 23 23 H 1.08001 * 119.90112 * 359.97438 * 4 3 2 24 24 H 0.97001 * 120.00242 * 179.97438 * 9 8 6 25 25 H 1.08005 * 120.78931 * 180.30060 * 14 5 4 26 26 H 1.08000 * 120.19496 * 180.02562 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2307 2.0005 -1.1742 5 6 2.7010 3.3143 -1.1999 6 6 2.9330 3.9719 -2.4284 7 1 3.2203 3.4025 -3.2999 8 6 2.7854 5.3587 -2.5174 9 7 3.3212 6.0115 -3.5185 10 14 1.8237 6.2815 -1.2085 11 1 2.7617 6.8124 -0.1871 12 1 1.0872 7.4075 -1.8370 13 1 0.8575 5.3582 -0.5610 14 6 2.9437 4.0008 0.0726 15 6 2.7055 3.3258 1.2270 16 6 2.2363 1.9977 1.1731 17 8 2.0246 1.3963 2.2125 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5140 0.8900 23 1 2.0412 1.4782 -2.1004 24 1 3.2184 6.9741 -3.5805 25 1 3.3030 5.0192 0.0917 26 1 2.8741 3.8040 2.1806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266917.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = -31.134377 kcal Electronic energy + Delta-G solvation = -11862.377890 eV Core-core repulsion = 9712.468269 eV Total energy + Delta-G solvation = -2149.909621 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.84412 -37.67252 -36.40400 -34.73761 -31.59095 -31.39516 -26.91100 -25.35900 -23.72700 -22.67520 -19.51072 -18.09517 -17.82851 -16.93208 -16.71248 -16.28557 -15.14459 -14.86586 -14.74301 -14.46348 -13.84186 -13.49297 -13.12619 -12.92363 -12.71233 -12.36920 -12.08336 -11.88601 -11.79159 -11.08048 -10.71251 -10.55999 -8.89842 -8.76892 -6.25220 0.12802 1.00909 1.29821 1.43574 1.49634 2.12278 2.14397 2.58571 3.26134 3.90137 4.02283 4.12588 4.24760 4.37283 4.45939 4.54431 4.81492 4.94507 5.01313 5.22722 5.25089 5.29182 5.64236 5.91773 6.24042 6.44239 6.71311 6.87946 7.35027 8.33093 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049667 B = 0.012839 C = 0.011513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.622500 B = 2180.295447 C = 2431.504835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.083 3.917 3 N -0.462 5.462 4 C -0.031 4.031 5 C -0.018 4.018 6 C -0.474 4.474 7 H 0.067 0.933 8 C 0.050 3.950 9 N -0.860 5.860 10 Si 0.938 3.062 11 H -0.253 1.253 12 H -0.276 1.276 13 H -0.256 1.256 14 C -0.065 4.065 15 C -0.248 4.248 16 C 0.472 3.528 17 O -0.634 6.634 18 H 0.100 0.900 19 H 0.036 0.964 20 H 0.062 0.938 21 H 0.114 0.886 22 H 0.083 0.917 23 H 0.166 0.834 24 H 0.289 0.711 25 H 0.126 0.874 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 -4.940 2.869 6.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.038 4.038 3 N -0.172 5.172 4 C -0.156 4.156 5 C -0.023 4.023 6 C -0.506 4.506 7 H 0.085 0.915 8 C -0.162 4.162 9 N -0.489 5.489 10 Si 0.762 3.238 11 H -0.178 1.178 12 H -0.202 1.202 13 H -0.180 1.180 14 C -0.088 4.088 15 C -0.269 4.269 16 C 0.276 3.724 17 O -0.526 6.526 18 H 0.119 0.881 19 H 0.055 0.945 20 H 0.081 0.919 21 H 0.132 0.868 22 H 0.101 0.899 23 H 0.183 0.817 24 H 0.100 0.900 25 H 0.144 0.856 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.016 -5.140 3.271 7.298 hybrid contribution -0.075 0.799 0.137 0.814 sum -4.091 -4.341 3.408 6.870 Atomic orbital electron populations 1.22031 0.93732 1.03962 1.01679 1.22055 0.96449 0.80427 1.04829 1.44585 1.51857 1.14691 1.06028 1.22023 1.09139 0.96101 0.88376 1.18465 0.98710 0.92844 0.92245 1.18829 1.43818 0.92306 0.95638 0.91525 1.26480 0.93918 0.98170 0.97637 1.69764 1.36403 1.10691 1.32063 0.85951 0.80206 0.78474 0.79157 1.17844 1.20186 1.18020 1.23095 0.93490 0.99368 0.92847 1.22021 1.10124 0.95099 0.99623 1.17009 0.83451 0.88866 0.83071 1.90744 1.61118 1.68295 1.32458 0.88137 0.94489 0.91902 0.86826 0.89897 0.81667 0.90022 0.85606 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.23 71.98 0.74 -3.37 15 2 C 0.08 2.49 5.98 86.38 0.52 3.00 15 3 N -0.46 -18.09 2.54 -648.40 -1.65 -19.74 15 4 C -0.03 -1.26 10.07 84.62 0.85 -0.41 15 5 C -0.02 -0.82 5.20 -20.03 -0.10 -0.92 15 6 C -0.47 -24.14 9.59 23.38 0.22 -23.91 15 7 H 0.07 3.61 8.06 -2.91 -0.02 3.58 15 8 C 0.05 2.53 5.43 85.19 0.46 2.99 15 9 N -0.86 -45.05 13.94 21.80 0.30 -44.75 15 10 Si 0.94 39.34 24.48 68.60 1.68 41.02 15 11 H -0.25 -9.89 6.65 99.48 0.66 -9.23 15 12 H -0.28 -11.10 7.11 99.48 0.71 -10.39 15 13 H -0.26 -10.99 6.84 99.48 0.68 -10.31 15 14 C -0.07 -2.85 7.38 23.90 0.18 -2.68 15 15 C -0.25 -10.58 9.95 22.38 0.22 -10.36 15 16 C 0.47 21.06 7.39 84.98 0.63 21.68 15 17 O -0.63 -30.79 16.49 -5.10 -0.08 -30.88 15 18 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 19 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 20 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.11 2.64 7.98 -2.39 -0.02 2.62 15 22 H 0.08 2.61 7.32 -2.38 -0.02 2.59 15 23 H 0.17 5.79 8.01 -2.91 -0.02 5.77 15 24 H 0.29 13.77 8.30 -92.71 -0.77 13.00 15 25 H 0.13 5.29 4.85 -2.91 -0.01 5.27 15 26 H 0.15 5.64 8.06 -2.91 -0.02 5.62 15 Total: -1.00 -60.24 226.26 5.07 -55.18 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.10 Total: 13.15 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 3.71 Total: -13.97 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -1.34 Total: -64.49 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.08 Total: -30.88 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.68 Total: 41.02 kcal Total: -60.24 5.07 -55.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266917.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.042 kcal (2) G-P(sol) polarization free energy of solvation -60.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds