Wall clock time and date at job start Mon Mar 30 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00440 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25040 * 3 2 1 5 5 C 1.38528 * 118.37272 * 180.26468 * 4 3 2 6 6 C 1.38256 * 119.22352 * 359.74889 * 5 4 3 7 7 N 1.31851 * 120.88531 * 359.97438 * 6 5 4 8 8 C 1.31834 * 121.77937 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65836 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 90.00054 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09000 * 109.47035 * 300.00307 * 1 2 3 19 19 H 1.08999 * 109.47157 * 60.00105 * 1 2 3 20 20 H 1.09001 * 109.47616 * 179.97438 * 1 2 3 21 21 H 1.08001 * 120.80935 * 0.02562 * 4 3 2 22 22 H 1.08001 * 120.39175 * 179.73293 * 5 4 3 23 23 H 1.07996 * 119.56108 * 179.97438 * 6 5 4 24 24 H 1.09004 * 109.47210 * 330.00348 * 9 8 7 25 25 H 1.08994 * 109.47551 * 210.00000 * 9 8 7 26 26 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3842 0.0052 5 6 1.9717 3.5945 -0.0006 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0329 0.0003 10 6 4.5343 -0.3840 1.4211 11 1 4.1537 0.2057 2.2420 12 6 5.2713 -1.5217 1.6732 13 7 5.7345 -2.2400 0.6736 14 14 5.6120 -2.0427 3.4344 15 1 4.3260 -2.2854 4.1364 16 1 6.4195 -3.2890 3.4345 17 1 6.3617 -0.9676 4.1325 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 0.2184 2.3518 0.0098 22 1 1.4235 4.5250 -0.0011 23 1 3.8851 4.5380 -0.0111 24 1 5.1961 0.2137 -0.5178 25 1 3.7055 -0.7591 -0.5093 26 1 6.2533 -3.0402 0.8510 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287786.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:32 Heat of formation + Delta-G solvation = -8.568408 kcal Electronic energy + Delta-G solvation = -11670.756627 eV Core-core repulsion = 9521.825540 eV Total energy + Delta-G solvation = -2148.931087 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.01213 -37.50629 -33.44845 -31.70013 -30.57098 -27.54050 -26.93949 -23.64902 -22.26250 -20.92198 -17.53740 -16.43552 -16.30727 -15.52010 -15.25787 -14.38780 -13.86915 -13.37732 -13.12288 -12.59512 -12.06837 -11.74078 -11.18382 -11.05152 -11.01125 -10.63168 -10.52079 -9.83878 -9.51841 -8.97056 -8.72918 -8.31031 -7.59421 -5.93999 -3.95494 1.79316 1.85361 3.38992 3.41956 3.45737 3.74405 4.40500 4.58923 5.08476 5.17318 5.20985 5.36554 5.39474 5.43765 5.66449 5.69996 5.78164 6.39449 6.50019 6.71873 7.02974 7.65217 7.71175 7.85627 8.00900 8.39566 8.81924 9.05085 9.65228 11.16781 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.039304 B = 0.011643 C = 0.010228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.221173 B = 2404.203913 C = 2736.903085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.289 6.289 3 C 0.073 3.927 4 C -0.175 4.175 5 C -0.168 4.168 6 C 0.054 3.946 7 N -0.452 5.452 8 C 0.155 3.845 9 C 0.067 3.933 10 C -0.499 4.499 11 H 0.052 0.948 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 H 0.049 0.951 19 H 0.047 0.953 20 H 0.097 0.903 21 H 0.128 0.872 22 H 0.125 0.875 23 H 0.147 0.853 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 7.229 -1.442 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.200 6.200 3 C 0.025 3.975 4 C -0.201 4.201 5 C -0.188 4.188 6 C -0.102 4.102 7 N -0.162 5.162 8 C 0.015 3.985 9 C 0.029 3.971 10 C -0.538 4.538 11 H 0.070 0.930 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.116 0.884 21 H 0.146 0.854 22 H 0.142 0.858 23 H 0.164 0.836 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.024 6.905 -1.491 11.460 hybrid contribution -1.126 -0.043 1.020 1.520 sum -10.150 6.862 -0.471 12.261 Atomic orbital electron populations 1.23004 0.79984 1.03607 1.00381 1.86312 1.19754 1.25743 1.88212 1.20065 0.93715 0.84622 0.99130 1.21553 0.99921 0.92541 1.06053 1.21715 0.95787 0.97517 1.03755 1.22599 0.91263 0.96756 0.99595 1.67754 1.39784 0.97498 1.11149 1.21917 0.88552 0.95500 0.92533 1.18228 0.94270 0.86209 0.98370 1.20837 1.33196 1.08845 0.90953 0.92986 1.24937 0.95774 0.96303 0.97181 1.69947 1.36392 1.16480 1.30607 0.86587 0.78255 0.77844 0.84899 1.20314 1.21199 1.20224 0.93258 0.93430 0.88444 0.85378 0.85753 0.83569 0.94273 0.93920 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.83 101.05 0.99 1.35 15 2 O -0.29 -5.87 9.54 -19.46 -0.19 -6.06 15 3 C 0.07 1.52 6.67 -39.07 -0.26 1.26 15 4 C -0.17 -2.92 9.14 -39.14 -0.36 -3.28 15 5 C -0.17 -2.62 10.11 -39.47 -0.40 -3.02 15 6 C 0.05 0.96 11.18 -17.54 -0.20 0.76 15 7 N -0.45 -10.24 10.27 -9.35 -0.10 -10.33 15 8 C 0.16 3.73 5.99 -82.42 -0.49 3.24 15 9 C 0.07 1.85 5.05 -29.03 -0.15 1.70 15 10 C -0.50 -14.80 9.09 -34.44 -0.31 -15.11 15 11 H 0.05 1.54 7.74 -52.49 -0.41 1.14 15 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 13 N -0.90 -27.29 13.29 55.43 0.74 -26.55 15 14 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 15 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 18 H 0.05 0.60 7.69 -51.93 -0.40 0.20 15 19 H 0.05 0.55 7.71 -51.93 -0.40 0.15 15 20 H 0.10 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.13 1.69 6.45 -52.49 -0.34 1.35 15 22 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 23 H 0.15 2.08 8.06 -52.49 -0.42 1.66 15 24 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.04 1.23 7.51 -51.93 -0.39 0.84 15 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 234.28 15.07 3.53 3.53 Total: -1.00 -32.87 234.28 -5.07 -37.93 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -2.76 Total: -4.38 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.27 Total: -11.45 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.64 Total: -36.89 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.19 Total: -6.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.87 -5.07 -37.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287786.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.365 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds