Wall clock time and date at job start Mon Mar 30 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 N 1.30256 * 125.61896 * 89.71911 * 10 9 7 12 12 C 1.34478 * 108.70246 * 179.84263 * 11 10 9 13 13 C 1.50706 * 126.16589 * 180.16924 * 12 11 10 14 14 C 1.53002 * 117.49631 * 164.04632 * 13 12 11 15 15 C 1.52997 * 117.49919 * 95.38216 * 13 12 11 16 16 C 1.34326 * 107.66900 * 0.41738 * 12 11 10 17 17 O 1.33972 * 125.62367 * 270.02458 * 10 9 7 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 20 20 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 21 21 H 1.08997 * 115.54771 * 309.70958 * 13 12 11 22 22 H 1.08992 * 117.50209 * 359.97438 * 14 13 12 23 23 H 1.09004 * 117.49584 * 145.02193 * 14 13 12 24 24 H 1.09001 * 117.49908 * 214.97561 * 15 13 12 25 25 H 1.08998 * 117.49861 * 359.97438 * 15 13 12 26 26 H 1.07999 * 126.44800 * 179.72835 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 7 4.2573 -3.3298 -1.0783 12 6 4.6929 -4.5417 -0.6913 13 6 5.0911 -5.6758 -1.6005 14 6 5.9006 -6.8209 -0.9886 15 6 6.5767 -5.8251 -1.9345 16 6 4.7039 -4.5612 0.6518 17 8 4.2780 -3.3530 1.0694 18 1 -0.4849 0.8401 0.0041 19 1 3.8711 -0.6782 -0.9024 20 1 3.8785 -0.6825 0.8776 21 1 4.3722 -5.9280 -2.3799 22 1 6.1455 -6.7538 0.0714 23 1 5.7145 -7.8264 -1.3659 24 1 6.8351 -6.1761 -2.9336 25 1 7.2660 -5.1029 -1.4971 26 1 4.9984 -5.3896 1.2790 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294479.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:57 Heat of formation + Delta-G solvation = 39.563459 kcal Electronic energy + Delta-G solvation = -11376.631828 eV Core-core repulsion = 9229.787895 eV Total energy + Delta-G solvation = -2146.843933 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.62718 -37.28008 -33.93324 -33.21698 -30.93906 -27.83186 -23.75049 -23.38544 -22.31180 -20.58594 -19.46384 -17.07224 -16.84532 -15.78245 -15.33052 -14.51991 -14.19381 -13.59224 -13.30099 -12.30523 -11.98290 -11.76245 -11.57221 -11.08598 -10.93860 -10.69669 -10.41334 -10.26022 -9.90580 -9.71654 -9.52080 -8.68371 -8.00600 -6.16807 -4.19054 2.12108 3.24700 3.28373 3.31942 3.32794 3.51728 3.88855 4.32542 4.46979 4.88134 4.98288 5.14136 5.24512 5.41513 5.56226 5.63669 5.81193 6.06215 6.18027 6.42305 6.50490 6.67142 6.88477 7.02032 7.45258 8.33750 8.54568 8.84488 9.38609 10.95773 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.075436 B = 0.008046 C = 0.007966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.085147 B = 3479.007300 C = 3514.207569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.072 3.928 10 C 0.257 3.743 11 N -0.499 5.499 12 C 0.013 3.987 13 C -0.068 4.068 14 C -0.175 4.175 15 C -0.168 4.168 16 C -0.108 4.108 17 O -0.203 6.203 18 H 0.268 0.732 19 H 0.059 0.941 20 H 0.048 0.952 21 H 0.118 0.882 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 -8.809 -0.265 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.034 3.966 10 C 0.050 3.950 11 N -0.227 5.227 12 C -0.106 4.106 13 C -0.087 4.087 14 C -0.212 4.212 15 C -0.205 4.205 16 C -0.179 4.179 17 O -0.091 6.091 18 H 0.078 0.922 19 H 0.077 0.923 20 H 0.066 0.934 21 H 0.135 0.865 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.254 -8.447 -0.844 14.097 hybrid contribution 0.327 0.433 0.674 0.865 sum 11.581 -8.015 -0.170 14.085 Atomic orbital electron populations 1.69879 1.06245 1.27326 1.49465 1.24890 0.94837 0.98964 0.94028 0.86795 0.80375 0.83385 0.78981 1.19695 1.20844 1.18740 1.20713 0.87184 0.95330 1.52911 0.90577 1.18429 0.97960 0.80681 0.99522 1.27101 0.93557 0.96999 0.77337 1.70359 1.18879 1.02994 1.30490 1.20736 1.04164 0.93994 0.91708 1.20008 0.94723 0.93739 1.00216 1.23006 1.04159 0.94722 0.99345 1.22974 0.94860 1.02202 1.00461 1.24373 1.09113 0.88644 0.95789 1.84489 1.63832 1.22200 1.38532 0.92232 0.92287 0.93353 0.86451 0.88743 0.88201 0.88397 0.88782 0.78097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.96 55.43 0.77 -26.30 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 3 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.26 -5.84 6.54 56.52 0.37 -5.47 15 7 C -0.52 -15.06 9.65 -34.44 -0.33 -15.39 15 8 H 0.08 2.43 7.98 -52.49 -0.42 2.01 15 9 C 0.07 1.77 4.67 -29.04 -0.14 1.64 15 10 C 0.26 6.03 7.53 -12.95 -0.10 5.94 15 11 N -0.50 -11.44 11.29 -7.36 -0.08 -11.52 15 12 C 0.01 0.25 6.75 -82.81 -0.56 -0.31 15 13 C -0.07 -0.99 6.33 -91.77 -0.58 -1.57 15 14 C -0.17 -1.85 10.01 -26.69 -0.27 -2.12 15 15 C -0.17 -1.97 10.24 -26.69 -0.27 -2.24 15 16 C -0.11 -1.91 11.48 29.35 0.34 -1.58 15 17 O -0.20 -4.37 10.78 5.35 0.06 -4.31 15 18 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 19 H 0.06 1.40 7.57 -51.93 -0.39 1.00 15 20 H 0.05 1.12 7.20 -51.93 -0.37 0.75 15 21 H 0.12 1.68 8.14 -51.93 -0.42 1.25 15 22 H 0.09 0.92 7.14 -51.93 -0.37 0.55 15 23 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.10 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.20 2.56 7.35 -52.49 -0.39 2.17 15 LS Contribution 234.49 15.07 3.53 3.53 Total: -1.00 -31.83 234.49 -5.19 -37.02 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -2.80 Total: -0.93 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.01 Total: -13.56 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.69 Total: -37.83 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.06 Total: -4.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.83 -5.19 -37.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294479.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.582 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds