Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31002 * 1 3 3 Si 1.86802 * 119.99999 * 2 1 4 4 H 1.48498 * 109.47244 * 85.01824 * 3 2 1 5 5 H 1.48499 * 109.46798 * 205.02101 * 3 2 1 6 6 H 1.48501 * 109.46703 * 325.01479 * 3 2 1 7 7 C 1.39904 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00243 * 189.43718 * 7 2 1 9 9 C 1.39913 * 120.00350 * 9.43378 * 7 2 1 10 10 C 1.39912 * 127.04968 * 10.37457 * 9 7 2 11 11 N 1.33179 * 107.87080 * 179.78718 * 10 9 7 12 12 C 1.31187 * 109.92223 * 0.42071 * 11 10 9 13 13 N 1.36909 * 109.28973 * 359.79934 * 12 11 10 14 14 C 1.46364 * 124.22310 * 179.81759 * 13 12 11 15 15 C 1.53372 * 108.74021 * 341.22869 * 14 13 12 16 16 C 1.53272 * 109.68485 * 49.12251 * 15 14 13 17 17 N 1.38270 * 128.69033 * 179.88959 * 12 11 10 18 18 H 0.96996 * 119.99684 * 0.02562 * 1 2 3 19 19 H 1.08004 * 126.06218 * 359.90694 * 10 9 7 20 20 H 1.08997 * 109.59622 * 101.03684 * 14 13 12 21 21 H 1.09006 * 109.58932 * 221.47912 * 14 13 12 22 22 H 1.08994 * 109.44859 * 289.04992 * 15 14 13 23 23 H 1.08999 * 109.39688 * 169.15265 * 15 14 13 24 24 H 1.08996 * 109.60249 * 177.37628 * 16 15 14 25 25 H 1.08998 * 109.73376 * 56.98168 * 16 15 14 26 26 H 0.96998 * 121.83959 * 346.78030 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.3863 2.1072 1.3948 5 1 3.5902 1.4120 -0.5922 6 1 1.4981 2.6199 -0.8028 7 6 2.0095 -1.2116 0.0005 8 1 3.0786 -1.2180 0.1539 9 6 1.3242 -2.4152 -0.1975 10 6 -0.0050 -2.5712 -0.6055 11 7 -0.2608 -3.8763 -0.6750 12 6 0.8054 -4.5596 -0.3325 13 7 1.8190 -3.6922 -0.0248 14 6 3.1558 -4.1068 0.4034 15 6 3.0881 -5.5586 0.8931 16 6 2.3553 -6.4191 -0.1422 17 7 0.9689 -5.9310 -0.2669 18 1 -0.4849 0.8400 -0.0004 19 1 -0.6998 -1.7744 -0.8269 20 1 3.8471 -4.0356 -0.4363 21 1 3.4956 -3.4632 1.2149 22 1 2.5522 -5.5972 1.8414 23 1 4.0992 -5.9413 1.0320 24 1 2.3487 -7.4587 0.1851 25 1 2.8578 -6.3425 -1.1064 26 1 0.2136 -6.5386 -0.3006 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261295999.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = 59.883616 kcal Electronic energy + Delta-G solvation = -12006.641648 eV Core-core repulsion = 9892.971615 eV Total energy + Delta-G solvation = -2113.670034 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05949 -35.91930 -33.45588 -32.64286 -29.35541 -28.12278 -25.31530 -23.45202 -21.52668 -19.94240 -18.39946 -17.05137 -15.42702 -15.10834 -15.07104 -14.46886 -13.69461 -13.33061 -13.04282 -12.63981 -11.75002 -11.47962 -11.25308 -11.05208 -10.78464 -10.74449 -10.45344 -10.11074 -9.38926 -8.57898 -8.05784 -7.90465 -6.50504 -6.27014 -3.92538 3.04382 3.16355 3.20452 3.85035 3.87968 4.09541 4.55836 4.84540 5.03812 5.29136 5.48137 5.54312 5.74234 5.82061 5.95544 6.12256 6.41581 6.89943 7.18917 7.37277 7.71498 7.87737 8.16474 8.50215 8.67781 9.06966 9.19815 9.34618 10.14513 10.49768 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.060797 B = 0.011858 C = 0.010135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.441993 B = 2360.612562 C = 2762.030313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.277 1.277 7 C -0.446 4.446 8 H 0.066 0.934 9 C 0.172 3.828 10 C -0.124 4.124 11 N -0.516 5.516 12 C 0.350 3.650 13 N -0.512 5.512 14 C 0.126 3.874 15 C -0.150 4.150 16 C 0.139 3.861 17 N -0.733 5.733 18 H 0.275 0.725 19 H 0.175 0.825 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -6.279 1.455 9.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.202 1.202 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.062 3.938 10 C -0.269 4.269 11 N -0.241 5.241 12 C 0.005 3.995 13 N -0.212 5.212 14 C 0.002 3.998 15 C -0.189 4.189 16 C 0.013 3.987 17 N -0.382 5.382 18 H 0.086 0.914 19 H 0.192 0.808 20 H 0.076 0.924 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.858 -6.428 1.260 8.788 hybrid contribution 1.047 0.894 0.311 1.411 sum 6.906 -5.534 1.570 8.988 Atomic orbital electron populations 1.69799 1.07089 1.28221 1.38410 1.25565 0.94798 1.00371 0.93569 0.86141 0.80022 0.80833 0.78613 1.19969 1.19026 1.20202 1.18157 0.94475 0.88856 1.46686 0.91555 1.18567 0.93830 0.81411 1.00005 1.22779 0.96077 0.89890 1.18191 1.69352 1.24672 1.06508 1.23603 1.19047 0.86525 0.83139 1.10769 1.45158 1.09967 1.07001 1.59052 1.21297 0.84463 0.94757 0.99296 1.22225 1.01136 0.95451 1.00057 1.21230 0.83312 0.96713 0.97450 1.42740 1.05999 1.00945 1.88553 0.91375 0.80826 0.92407 0.90673 0.90984 0.90057 0.90892 0.93612 0.75650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.15 10.64 55.55 0.59 -21.56 15 2 C 0.07 1.91 5.45 -17.28 -0.09 1.81 15 3 Si 0.92 19.57 29.57 -169.99 -5.03 14.54 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.45 -12.36 9.17 -38.33 -0.35 -12.71 15 8 H 0.07 1.73 7.86 -52.49 -0.41 1.32 15 9 C 0.17 4.92 6.72 -83.82 -0.56 4.36 15 10 C -0.12 -3.72 10.82 -16.34 -0.18 -3.90 15 11 N -0.52 -14.68 11.19 -12.69 -0.14 -14.82 15 12 C 0.35 8.82 8.64 -318.72 -2.75 6.06 15 13 N -0.51 -12.86 3.22 -114.63 -0.37 -13.23 15 14 C 0.13 2.42 6.89 -3.92 -0.03 2.39 15 15 C -0.15 -2.23 6.12 -26.40 -0.16 -2.39 15 16 C 0.14 2.07 7.06 -3.36 -0.02 2.05 15 17 N -0.73 -14.18 6.00 -60.69 -0.36 -14.54 15 18 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 19 H 0.17 5.36 6.13 -52.48 -0.32 5.04 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.41 7.02 8.96 -40.82 -0.37 6.66 15 LS Contribution 222.91 15.07 3.36 3.36 Total: -1.00 -32.56 222.91 -8.88 -41.44 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.77 Total: 7.13 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -4.15 Total: -2.32 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.28 Total: -64.15 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.56 -8.88 -41.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295999.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.323 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds