Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31004 * 1 3 3 Si 1.86804 * 119.99834 * 2 1 4 4 H 1.48493 * 109.47291 * 89.99998 * 3 2 1 5 5 H 1.48502 * 109.46683 * 210.00081 * 3 2 1 6 6 H 1.48499 * 109.46984 * 329.99499 * 3 2 1 7 7 C 1.39725 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99720 * 18.25591 * 7 2 1 9 9 C 1.41478 * 120.00046 * 198.24738 * 7 2 1 10 10 C 1.47592 * 128.74080 * 11.36111 * 9 7 2 11 11 N 1.29849 * 105.36817 * 179.97438 * 10 9 7 12 12 O 1.20562 * 112.93900 * 359.97438 * 11 10 9 13 13 C 1.33762 * 113.30445 * 359.71450 * 12 11 10 14 14 C 1.50700 * 127.06953 * 180.34637 * 13 12 11 15 15 C 1.53781 * 113.61030 * 39.25920 * 14 13 12 16 16 C 1.53951 * 87.01974 * 220.05028 * 15 14 13 17 17 C 1.53777 * 87.11447 * 25.36342 * 16 15 14 18 18 H 0.97002 * 120.00286 * 174.93378 * 1 2 3 19 19 H 1.08005 * 127.31841 * 359.97039 * 10 9 7 20 20 H 1.08994 * 112.84993 * 170.45731 * 14 13 12 21 21 H 1.08997 * 113.61769 * 334.57216 * 15 14 13 22 22 H 1.09007 * 113.60872 * 105.47564 * 15 14 13 23 23 H 1.09009 * 113.53682 * 270.81290 * 16 15 14 24 24 H 1.09003 * 113.74265 * 139.95094 * 16 15 14 25 25 H 1.08991 * 113.62120 * 220.09377 * 17 16 15 26 26 H 1.08998 * 113.61207 * 89.18135 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.4915 2.0465 1.4000 5 1 3.5416 1.4402 -0.7001 6 1 1.4415 2.6526 -0.7001 7 6 2.0087 -1.2100 0.0005 8 1 1.5094 -2.1219 -0.2921 9 6 3.3701 -1.2407 0.3842 10 6 4.1728 -0.1816 1.0263 11 7 5.3582 -0.6905 1.1748 12 8 5.4393 -1.8206 0.7630 13 6 4.2906 -2.2835 0.2575 14 6 4.0415 -3.6484 -0.3306 15 6 4.7462 -4.7845 0.4293 16 6 5.0561 -5.4037 -0.9457 17 6 4.9547 -3.9817 -1.5222 18 1 -0.4850 -0.8368 -0.0742 19 1 3.8442 0.8068 1.3119 20 1 2.9859 -3.8404 -0.5224 21 1 5.6341 -4.4613 0.9727 22 1 4.0717 -5.3865 1.0383 23 1 4.2779 -6.0771 -1.3052 24 1 6.0549 -5.8342 -1.0182 25 1 4.4484 -3.9364 -2.4863 26 1 5.8997 -3.4386 -1.5133 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261304506.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = 41.087102 kcal Electronic energy + Delta-G solvation = -11902.464573 eV Core-core repulsion = 9755.686710 eV Total energy + Delta-G solvation = -2146.777863 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.97616 -39.36389 -36.20053 -33.88096 -32.35574 -28.13466 -26.41377 -26.15537 -23.74419 -21.46648 -20.36146 -20.19774 -18.02670 -17.93103 -16.51435 -16.17103 -15.65086 -15.26884 -14.35516 -13.94923 -13.37519 -13.29776 -13.19461 -13.01311 -12.23832 -11.82475 -11.61670 -11.45167 -11.37758 -11.20735 -11.04440 -10.67661 -9.87574 -9.37539 -6.55280 0.88603 1.22670 1.39151 1.62782 1.69591 2.12718 2.75984 3.01567 3.66862 3.80876 3.89372 3.92635 4.16807 4.19677 4.74210 4.81975 4.92103 4.94477 5.09749 5.13671 5.14497 5.28775 5.44279 5.49064 5.68078 6.05440 6.24611 6.69960 7.85102 7.99263 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.047153 B = 0.013102 C = 0.011082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.663821 B = 2136.577441 C = 2525.968751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.013 3.987 3 Si 1.092 2.908 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.060 0.940 9 C -0.028 4.028 10 C -0.120 4.120 11 N -0.383 5.383 12 O 0.093 5.907 13 C -0.214 4.214 14 C -0.004 4.004 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.134 4.134 18 H 0.279 0.721 19 H 0.181 0.819 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -5.718 -1.909 8.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.201 4.201 3 Si 0.914 3.086 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.079 0.921 9 C -0.033 4.033 10 C -0.297 4.297 11 N -0.083 5.083 12 O 0.019 5.981 13 C -0.276 4.276 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.158 4.158 17 C -0.171 4.171 18 H 0.090 0.910 19 H 0.197 0.803 20 H 0.110 0.890 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.181 -3.617 -1.336 8.151 hybrid contribution -1.222 -1.568 -0.178 1.996 sum 5.958 -5.185 -1.515 8.042 Atomic orbital electron populations 1.70681 1.08116 1.32581 1.35412 1.28019 0.95896 1.06371 0.89814 0.83468 0.74707 0.71237 0.79180 1.18021 1.19224 1.19541 1.19662 0.93875 0.96705 1.44240 0.92139 1.20251 0.94830 0.91387 0.96843 1.26232 0.91631 1.02920 1.08907 1.73000 1.22251 0.95429 1.17607 1.84011 1.34344 1.21091 1.58663 1.24224 0.84663 1.00847 1.17879 1.20666 0.99408 0.85441 0.96855 1.23021 1.00346 0.96201 0.97523 1.22779 1.03109 0.95256 0.94607 1.23005 0.99324 0.97665 0.97139 0.90987 0.80251 0.89048 0.90421 0.90912 0.88770 0.89531 0.91159 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.04 13.67 21.79 0.30 -45.74 15 2 C 0.01 0.67 5.51 85.18 0.47 1.14 15 3 Si 1.09 47.85 24.85 68.60 1.70 49.55 15 4 H -0.25 -10.23 6.67 99.48 0.66 -9.57 15 5 H -0.27 -11.71 6.55 99.48 0.65 -11.06 15 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 7 C -0.51 -28.34 9.63 23.43 0.23 -28.12 15 8 H 0.06 3.45 7.62 -2.91 -0.02 3.43 15 9 C -0.03 -1.45 5.87 -19.67 -0.12 -1.57 15 10 C -0.12 -5.99 9.75 87.46 0.85 -5.14 15 11 N -0.38 -18.64 11.96 -53.10 -0.64 -19.27 15 12 O 0.09 4.36 10.88 74.67 0.81 5.18 15 13 C -0.21 -10.02 6.64 26.03 0.17 -9.85 15 14 C 0.00 -0.16 4.15 -11.01 -0.05 -0.21 15 15 C -0.13 -3.99 7.64 31.18 0.24 -3.75 15 16 C -0.12 -2.89 8.09 31.18 0.25 -2.64 15 17 C -0.13 -4.10 7.63 31.12 0.24 -3.86 15 18 H 0.28 15.04 8.73 -92.71 -0.81 14.23 15 19 H 0.18 8.27 4.21 -2.91 -0.01 8.25 15 20 H 0.09 3.61 7.62 -2.39 -0.02 3.59 15 21 H 0.08 2.39 7.94 -2.39 -0.02 2.37 15 22 H 0.07 2.01 8.14 -2.38 -0.02 1.99 15 23 H 0.09 1.96 8.14 -2.38 -0.02 1.94 15 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.07 2.38 8.09 -2.39 -0.02 2.36 15 Total: -1.00 -58.94 223.38 5.51 -53.43 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.04 Total: 10.83 kcal Atomic # 6 Polarization: -56.27 SS G_CDS: 2.29 Total: -53.98 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.34 Total: -65.01 kcal Atomic # 8 Polarization: 4.36 SS G_CDS: 0.81 Total: 5.18 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.70 Total: 49.55 kcal Total: -58.94 5.51 -53.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261304506.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.518 kcal (2) G-P(sol) polarization free energy of solvation -58.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds