Wall clock time and date at job start Mon Mar 30 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38110 * 120.83330 * 264.71818 * 11 10 9 13 13 N 1.32549 * 119.19714 * 179.74633 * 12 11 10 14 14 C 1.31792 * 121.01389 * 0.56341 * 13 12 11 15 15 N 1.31753 * 121.82819 * 359.68894 * 14 13 12 16 16 C 1.32992 * 120.68514 * 0.02562 * 15 14 13 17 17 N 1.38543 * 120.53070 * 179.97438 * 16 15 14 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.08004 * 120.40659 * 0.02770 * 12 11 10 24 24 H 1.07991 * 119.08670 * 179.70542 * 14 13 12 25 25 H 0.97000 * 120.00368 * 180.02562 * 17 16 15 26 26 H 0.97000 * 119.99862 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2326 -5.6345 1.1823 13 7 0.5626 -6.7776 1.1457 14 6 0.1525 -7.2880 0.0019 15 7 0.3819 -6.6883 -1.1486 16 6 1.0430 -5.5351 -1.1929 17 7 1.2829 -4.9075 -2.4045 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 1.5678 -5.2275 2.1249 24 1 -0.3867 -8.2236 0.0078 25 1 1.7661 -4.0667 -2.4279 26 1 0.9676 -5.3088 -3.2294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261311798.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:32 Heat of formation + Delta-G solvation = 8.651772 kcal Electronic energy + Delta-G solvation = -11475.214016 eV Core-core repulsion = 9359.322403 eV Total energy + Delta-G solvation = -2115.891613 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.81189 -36.94727 -35.83152 -34.37179 -32.51599 -30.60510 -27.27866 -24.71775 -24.32884 -22.15456 -19.22054 -18.85172 -18.52743 -16.54310 -16.40387 -15.78870 -15.62033 -15.29557 -14.57059 -14.28609 -14.21898 -13.31290 -12.87602 -12.74311 -12.58546 -11.95833 -11.87328 -11.56001 -11.09665 -10.69848 -10.56303 -10.08853 -9.10092 -8.18674 -6.30438 0.18817 0.46769 1.41812 1.43385 1.55637 2.42159 2.48760 3.02364 3.15360 3.49485 3.60317 3.91958 4.15606 4.43880 4.72703 4.84802 4.98266 5.13639 5.48213 5.56701 5.70087 5.83614 5.92732 6.22986 6.31638 6.78984 6.87895 7.39585 7.39932 8.92701 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.064914 B = 0.008414 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.234901 B = 3327.025050 C = 3458.943630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.037 3.963 10 C -0.046 4.046 11 C -0.247 4.247 12 C 0.159 3.841 13 N -0.577 5.577 14 C 0.314 3.686 15 N -0.595 5.595 16 C 0.428 3.572 17 N -0.823 5.823 18 H 0.262 0.738 19 H -0.006 1.006 20 H -0.016 1.016 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.175 0.825 24 H 0.225 0.775 25 H 0.418 0.582 26 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -9.412 -2.382 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.086 0.914 9 C -0.001 4.001 10 C -0.085 4.085 11 C -0.257 4.257 12 C -0.001 4.001 13 N -0.296 5.296 14 C 0.025 3.975 15 N -0.321 5.321 16 C 0.181 3.819 17 N -0.368 5.368 18 H 0.071 0.929 19 H 0.012 0.988 20 H 0.003 0.997 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.192 0.808 24 H 0.241 0.759 25 H 0.251 0.749 26 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.189 -10.132 -2.355 10.880 hybrid contribution 0.436 1.967 -0.318 2.039 sum 3.626 -8.165 -2.673 9.325 Atomic orbital electron populations 1.70125 1.07946 1.27605 1.51901 1.25956 0.95601 1.03326 0.94827 0.85420 0.79326 0.78940 0.77491 1.18156 1.20673 1.20899 1.21728 0.93778 0.91877 1.50133 0.91436 1.18932 0.93978 0.92288 0.94871 1.20276 0.96846 0.88890 1.02503 1.21298 1.08869 1.01440 0.94118 1.23084 0.89924 0.89055 0.98018 1.68420 1.16149 1.14024 1.30988 1.25238 0.92036 0.98566 0.81622 1.67999 1.21225 1.10461 1.32385 1.18617 0.87583 0.88265 0.87436 1.42258 1.62531 1.27075 1.04903 0.92941 0.98785 0.99727 0.90819 0.91185 0.80778 0.75896 0.74897 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.96 13.29 21.45 0.28 -55.67 15 2 C 0.00 0.03 5.46 84.65 0.46 0.49 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 7 C -0.54 -28.81 9.11 25.60 0.23 -28.58 15 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 15 9 C 0.04 1.82 4.95 29.85 0.15 1.97 15 10 C -0.05 -1.77 4.80 29.85 0.14 -1.63 15 11 C -0.25 -8.82 5.19 -19.56 -0.10 -8.92 15 12 C 0.16 5.37 10.97 84.55 0.93 6.30 15 13 N -0.58 -18.81 10.43 -200.32 -2.09 -20.90 15 14 C 0.31 9.29 12.28 180.90 2.22 11.51 15 15 N -0.60 -19.29 10.47 -197.61 -2.07 -21.36 15 16 C 0.43 14.53 7.81 133.16 1.04 15.57 15 17 N -0.82 -23.55 8.98 -55.09 -0.49 -24.05 15 18 H 0.26 14.78 8.31 -92.71 -0.77 14.00 15 19 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 15 20 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 15 21 H 0.07 2.66 8.07 -2.39 -0.02 2.64 15 22 H 0.07 2.44 6.94 -2.39 -0.02 2.42 15 23 H 0.18 5.17 8.06 -2.91 -0.02 5.15 15 24 H 0.22 4.59 8.06 -2.92 -0.02 4.56 15 25 H 0.42 11.98 7.07 -92.71 -0.66 11.33 15 26 H 0.41 9.73 8.95 -92.71 -0.83 8.90 15 Total: -1.00 -65.10 234.08 2.45 -62.64 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.28 Total: 17.80 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.07 Total: -3.29 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -4.37 Total: -121.97 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -65.10 2.45 -62.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261311798.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.296 kcal (2) G-P(sol) polarization free energy of solvation -65.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds