Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47023 * 270.00160 * 3 2 1 5 5 H 1.48497 * 109.47171 * 29.99901 * 3 2 1 6 6 H 1.48498 * 109.47139 * 150.00348 * 3 2 1 7 7 C 1.37880 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46927 * 59.99622 * 9 7 2 11 11 O 1.42905 * 109.46937 * 299.99878 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38119 * 120.03569 * 94.99969 * 12 9 7 14 14 C 1.38274 * 120.07210 * 179.97438 * 13 12 9 15 15 C 1.38302 * 120.14548 * 0.04116 * 14 13 12 16 16 C 1.38075 * 120.08026 * 359.97438 * 15 14 13 17 17 C 1.38889 * 120.03460 * 274.72238 * 12 9 7 18 18 N 1.39675 * 120.07541 * 0.02562 * 17 12 9 19 19 H 0.96991 * 120.00258 * 359.97438 * 1 2 3 20 20 H 0.96705 * 113.99788 * 300.00011 * 11 9 7 21 21 H 1.08004 * 119.96846 * 359.97438 * 13 12 9 22 22 H 1.07999 * 119.91955 * 180.02562 * 14 13 12 23 23 H 1.08003 * 119.95427 * 179.97438 * 15 14 13 24 24 H 1.07997 * 120.03588 * 180.02562 * 16 15 14 25 25 H 0.96996 * 119.99781 * 359.97438 * 18 17 12 26 26 H 0.97001 * 119.99742 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8752 -0.6803 0.8888 11 8 3.9874 -0.5201 -1.1680 12 6 4.0140 -2.6148 -0.0010 13 6 4.3422 -3.2322 -1.1921 14 6 4.8037 -4.5356 -1.1929 15 6 4.9374 -5.2257 -0.0018 16 6 4.6108 -4.6147 1.1925 17 6 4.1528 -3.3030 1.1974 18 7 3.8268 -2.6799 2.4042 19 1 -0.4850 0.8399 0.0004 20 1 3.7017 -0.9235 -1.9992 21 1 4.2383 -2.6963 -2.1241 22 1 5.0601 -5.0158 -2.1257 23 1 5.2978 -6.2438 -0.0060 24 1 4.7159 -5.1541 2.1222 25 1 3.5033 -1.7655 2.4059 26 1 3.9238 -3.1617 3.2405 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261311855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = -27.656967 kcal Electronic energy + Delta-G solvation = -11882.506409 eV Core-core repulsion = 9732.747580 eV Total energy + Delta-G solvation = -2149.758829 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01207 -35.80190 -33.90773 -32.29902 -30.44198 -28.23184 -26.87326 -23.06794 -21.49836 -20.11664 -17.52527 -16.60421 -16.34851 -15.31111 -14.81854 -13.90389 -13.59823 -13.26825 -12.90642 -12.81075 -12.54402 -11.86937 -11.23527 -10.99278 -10.77384 -10.52415 -10.05155 -9.90708 -9.27774 -8.75518 -8.70602 -8.00248 -6.80714 -6.17060 -4.29339 2.09457 2.27405 3.39488 3.44166 3.56023 4.44002 4.47903 4.59985 5.10788 5.47813 5.54334 5.72210 5.81871 6.06415 6.16798 6.46318 6.64453 6.77302 6.98365 7.18634 7.44244 7.48543 7.53835 8.13329 8.26396 8.41020 8.77926 8.96041 9.44866 10.92902 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049995 B = 0.012630 C = 0.011794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.924137 B = 2216.480851 C = 2373.496678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.231 3.769 10 H 0.062 0.938 11 O -0.583 6.583 12 C -0.141 4.141 13 C -0.074 4.074 14 C -0.184 4.184 15 C -0.094 4.094 16 C -0.208 4.208 17 C 0.222 3.778 18 N -0.874 5.874 19 H 0.266 0.734 20 H 0.362 0.638 21 H 0.116 0.884 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.405 0.595 26 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 -5.703 1.451 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.123 4.123 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.233 1.233 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.173 3.827 10 H 0.080 0.920 11 O -0.390 6.390 12 C -0.146 4.146 13 C -0.093 4.093 14 C -0.204 4.204 15 C -0.113 4.113 16 C -0.231 4.231 17 C 0.117 3.883 18 N -0.413 5.413 19 H 0.075 0.925 20 H 0.210 0.790 21 H 0.134 0.866 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.236 0.764 26 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.439 -5.219 1.871 10.097 hybrid contribution -0.146 0.514 -0.046 0.536 sum 8.293 -4.705 1.824 9.708 Atomic orbital electron populations 1.69952 1.06588 1.27473 1.48596 1.25055 0.94702 0.99798 0.92765 0.86290 0.79074 0.81820 0.78745 1.20297 1.23272 1.19398 1.21461 0.88964 0.94856 1.53553 0.90645 1.18764 0.93683 0.84603 0.85611 0.92012 1.86395 1.77692 1.58118 1.16799 1.20404 1.03066 0.99471 0.91643 1.20626 0.97168 0.94284 0.97205 1.20734 1.06810 0.95550 0.97334 1.20637 0.99635 0.98651 0.92338 1.20421 1.10211 0.94350 0.98141 1.17572 0.92899 0.91382 0.86485 1.42515 1.75715 1.18125 1.04936 0.92455 0.78979 0.86590 0.87324 0.87253 0.87212 0.76448 0.78443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.91 15 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 15 3 Si 0.91 22.76 26.18 -169.99 -4.45 18.31 15 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 15 6 H -0.27 -6.62 6.54 56.52 0.37 -6.25 15 7 C -0.55 -15.12 9.33 -34.44 -0.32 -15.44 15 8 H 0.08 2.30 7.98 -52.49 -0.42 1.88 15 9 C 0.23 5.47 1.99 -29.03 -0.06 5.41 15 10 H 0.06 1.49 5.86 -51.93 -0.30 1.19 15 11 O -0.58 -13.44 10.69 -35.23 -0.38 -13.82 15 12 C -0.14 -3.01 5.02 -104.42 -0.52 -3.53 15 13 C -0.07 -1.42 9.30 -39.61 -0.37 -1.79 15 14 C -0.18 -3.11 10.04 -39.54 -0.40 -3.51 15 15 C -0.09 -1.51 10.04 -39.62 -0.40 -1.91 15 16 C -0.21 -3.54 9.90 -39.38 -0.39 -3.93 15 17 C 0.22 4.29 6.74 -83.79 -0.56 3.72 15 18 N -0.87 -15.01 8.99 32.41 0.29 -14.72 15 19 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 20 H 0.36 7.37 7.32 45.56 0.33 7.70 15 21 H 0.12 2.05 6.41 -52.48 -0.34 1.71 15 22 H 0.11 1.55 8.06 -52.49 -0.42 1.12 15 23 H 0.11 1.43 8.06 -52.48 -0.42 1.01 15 24 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.40 7.45 6.93 -40.82 -0.28 7.16 15 26 H 0.39 5.31 8.84 -40.82 -0.36 4.94 15 LS Contribution 224.21 15.07 3.38 3.38 Total: -1.00 -31.15 224.21 -5.31 -36.45 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -1.80 Total: 15.07 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.12 Total: -18.77 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.06 Total: -40.62 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.38 Total: -13.82 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.45 Total: 18.31 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.15 -5.31 -36.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261311855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.797 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds