Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47023 * 270.00160 * 3 2 1 5 5 H 1.48497 * 109.47171 * 29.99901 * 3 2 1 6 6 H 1.48498 * 109.47139 * 150.00348 * 3 2 1 7 7 C 1.37880 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46927 * 59.99622 * 9 7 2 11 11 O 1.42905 * 109.46937 * 299.99878 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38119 * 120.03569 * 94.99969 * 12 9 7 14 14 C 1.38274 * 120.07210 * 179.97438 * 13 12 9 15 15 C 1.38302 * 120.14548 * 0.04116 * 14 13 12 16 16 C 1.38075 * 120.08026 * 359.97438 * 15 14 13 17 17 C 1.38889 * 120.03460 * 274.72238 * 12 9 7 18 18 N 1.39675 * 120.07541 * 0.02562 * 17 12 9 19 19 H 0.96991 * 120.00258 * 359.97438 * 1 2 3 20 20 H 0.96705 * 113.99788 * 300.00011 * 11 9 7 21 21 H 1.08004 * 119.96846 * 359.97438 * 13 12 9 22 22 H 1.07999 * 119.91955 * 180.02562 * 14 13 12 23 23 H 1.08003 * 119.95427 * 179.97438 * 15 14 13 24 24 H 1.07997 * 120.03588 * 180.02562 * 16 15 14 25 25 H 0.96996 * 119.99781 * 359.97438 * 18 17 12 26 26 H 0.97001 * 119.99742 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8752 -0.6803 0.8888 11 8 3.9874 -0.5201 -1.1680 12 6 4.0140 -2.6148 -0.0010 13 6 4.3422 -3.2322 -1.1921 14 6 4.8037 -4.5356 -1.1929 15 6 4.9374 -5.2257 -0.0018 16 6 4.6108 -4.6147 1.1925 17 6 4.1528 -3.3030 1.1974 18 7 3.8268 -2.6799 2.4042 19 1 -0.4850 0.8399 0.0004 20 1 3.7017 -0.9235 -1.9992 21 1 4.2383 -2.6963 -2.1241 22 1 5.0601 -5.0158 -2.1257 23 1 5.2978 -6.2438 -0.0060 24 1 4.7159 -5.1541 2.1222 25 1 3.5033 -1.7655 2.4059 26 1 3.9238 -3.1617 3.2405 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261311855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = -51.447592 kcal Electronic energy + Delta-G solvation = -11883.538048 eV Core-core repulsion = 9732.747580 eV Total energy + Delta-G solvation = -2150.790468 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.46710 -37.56494 -35.28367 -34.44280 -31.97541 -29.73947 -28.64439 -24.85973 -22.90330 -21.70318 -19.52636 -18.12543 -17.78620 -16.93565 -16.76224 -15.46671 -15.19923 -14.89424 -14.58080 -14.41526 -14.08951 -13.69636 -12.98045 -12.90761 -12.51591 -11.91984 -11.77285 -11.38693 -11.26629 -10.89061 -10.58337 -9.46338 -8.37255 -8.20276 -6.51611 0.69580 0.89834 1.39181 1.42482 1.56745 2.35611 2.94916 3.10563 3.24134 3.98863 4.16647 4.20030 4.42798 4.67081 4.78881 5.08818 5.13216 5.29192 5.41520 5.60122 5.81239 5.91192 6.10927 6.20988 6.60598 6.73542 7.06199 7.14326 7.28446 8.77421 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049995 B = 0.012630 C = 0.011794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.924137 B = 2216.480851 C = 2373.496678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.032 3.968 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.032 0.968 9 C 0.241 3.759 10 H 0.057 0.943 11 O -0.586 6.586 12 C -0.183 4.183 13 C -0.088 4.088 14 C -0.187 4.187 15 C -0.087 4.087 16 C -0.210 4.210 17 C 0.203 3.797 18 N -0.871 5.871 19 H 0.269 0.731 20 H 0.373 0.627 21 H 0.122 0.878 22 H 0.138 0.862 23 H 0.148 0.852 24 H 0.138 0.862 25 H 0.397 0.603 26 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -6.662 1.470 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.168 4.168 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.051 0.949 9 C 0.184 3.816 10 H 0.074 0.926 11 O -0.395 6.395 12 C -0.188 4.188 13 C -0.107 4.107 14 C -0.207 4.207 15 C -0.105 4.105 16 C -0.233 4.233 17 C 0.098 3.902 18 N -0.411 5.411 19 H 0.078 0.922 20 H 0.223 0.777 21 H 0.139 0.861 22 H 0.156 0.844 23 H 0.166 0.834 24 H 0.156 0.844 25 H 0.226 0.774 26 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.194 -6.202 1.900 12.083 hybrid contribution -0.675 0.663 -0.071 0.949 sum 9.520 -5.539 1.829 11.165 Atomic orbital electron populations 1.70066 1.08194 1.28429 1.50697 1.25813 0.95263 1.03087 0.92652 0.85313 0.77990 0.77970 0.78694 1.20165 1.22806 1.18670 1.21589 0.91198 0.92909 1.52329 0.94937 1.18454 0.90956 0.86724 0.85494 0.92559 1.86321 1.77454 1.58432 1.17255 1.20314 1.06304 0.98636 0.93551 1.20864 0.97415 0.95608 0.96794 1.21098 1.05866 0.94612 0.99170 1.21149 0.97665 1.00155 0.91529 1.20811 1.09095 0.93403 0.99973 1.17862 0.93431 0.92520 0.86421 1.42488 1.75425 1.17831 1.05353 0.92233 0.77734 0.86055 0.84415 0.83416 0.84380 0.77405 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.96 21.45 0.30 -57.05 15 2 C 0.03 1.84 5.47 84.65 0.46 2.30 15 3 Si 0.97 47.12 26.18 68.60 1.80 48.92 15 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 15 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 15 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 15 7 C -0.54 -30.43 9.33 25.60 0.24 -30.19 15 8 H 0.03 2.06 7.98 -2.91 -0.02 2.04 15 9 C 0.24 11.44 1.99 29.10 0.06 11.50 15 10 H 0.06 2.72 5.86 -2.39 -0.01 2.70 15 11 O -0.59 -26.60 10.69 -148.98 -1.59 -28.19 15 12 C -0.18 -7.72 5.02 -19.74 -0.10 -7.82 15 13 C -0.09 -3.28 9.30 22.25 0.21 -3.07 15 14 C -0.19 -5.78 10.04 22.29 0.22 -5.56 15 15 C -0.09 -2.46 10.04 22.25 0.22 -2.24 15 16 C -0.21 -6.52 9.90 22.40 0.22 -6.30 15 17 C 0.20 7.63 6.74 38.21 0.26 7.89 15 18 N -0.87 -29.33 8.99 -51.37 -0.46 -29.80 15 19 H 0.27 15.43 8.31 -92.72 -0.77 14.66 15 20 H 0.37 14.98 7.32 -74.05 -0.54 14.44 15 21 H 0.12 4.18 6.41 -2.91 -0.02 4.16 15 22 H 0.14 3.38 8.06 -2.91 -0.02 3.36 15 23 H 0.15 3.05 8.06 -2.91 -0.02 3.03 15 24 H 0.14 3.42 8.06 -2.91 -0.02 3.40 15 25 H 0.40 14.65 6.93 -92.71 -0.64 14.01 15 26 H 0.40 10.51 8.84 -92.71 -0.82 9.69 15 Total: -1.00 -66.81 224.21 1.00 -65.82 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.84 Total: 33.79 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 1.79 Total: -33.49 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -0.16 Total: -86.85 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.59 Total: -28.19 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.80 Total: 48.92 kcal Total: -66.81 1.00 -65.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261311855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.369 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds