Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86798 * 119.99477 * 2 1 4 4 H 1.48511 * 109.46622 * 239.99543 * 3 2 1 5 5 H 1.48499 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47482 * 120.00168 * 3 2 1 7 7 C 1.40336 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.39796 * 119.99821 * 0.02562 * 7 2 1 10 10 N 1.32815 * 125.79837 * 180.02562 * 9 7 2 11 11 C 1.33057 * 108.65398 * 179.97438 * 10 9 7 12 12 C 1.50703 * 126.01339 * 179.97438 * 11 10 9 13 13 C 1.53782 * 113.61415 * 194.17561 * 12 11 10 14 14 C 1.53961 * 87.01813 * 220.04995 * 13 12 11 15 15 C 1.53776 * 87.11089 * 25.36361 * 14 13 12 16 16 C 1.35945 * 107.98029 * 359.97438 * 11 10 9 17 17 O 1.34602 * 107.35448 * 0.02562 * 16 11 10 18 18 H 0.97001 * 120.00153 * 0.02562 * 1 2 3 19 19 H 1.08999 * 112.84692 * 325.37547 * 12 11 10 20 20 H 1.09004 * 113.61280 * 334.56528 * 13 12 11 21 21 H 1.08995 * 113.61349 * 105.47438 * 13 12 11 22 22 H 1.09003 * 113.53606 * 270.81244 * 14 13 12 23 23 H 1.08999 * 113.74161 * 139.94906 * 14 13 12 24 24 H 1.09000 * 113.61297 * 220.09090 * 15 14 13 25 25 H 1.08997 * 113.61671 * 89.18855 * 15 14 13 26 26 H 1.07990 * 126.32098 * 179.74097 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6964 -1.2126 5 1 1.2751 2.7465 -0.0006 6 1 3.0940 1.6966 1.2125 7 6 2.0080 -1.2153 0.0005 8 1 3.0881 -1.2153 0.0010 9 6 1.3091 -2.4260 0.0005 10 7 1.8536 -3.6374 0.0015 11 6 0.8782 -4.5424 0.0017 12 6 1.0578 -6.0387 0.0022 13 6 -0.2252 -6.8132 -0.3427 14 6 0.1833 -7.8177 0.7502 15 6 0.9710 -6.6691 1.4022 16 6 -0.3089 -3.8800 0.0014 17 8 -0.0335 -2.5624 0.0005 18 1 -0.4850 0.8400 -0.0004 19 1 1.9289 -6.3606 -0.5684 20 1 -1.1401 -6.2667 -0.1135 21 1 -0.2235 -7.2354 -1.3476 22 1 0.8146 -8.6271 0.3835 23 1 -0.6517 -8.1726 1.3543 24 1 1.9370 -6.9750 1.8039 25 1 0.3838 -6.0832 2.1092 26 1 -1.2915 -4.3280 -0.0024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261313413.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = -4.925622 kcal Electronic energy + Delta-G solvation = -11652.695932 eV Core-core repulsion = 9503.922808 eV Total energy + Delta-G solvation = -2148.773124 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.01958 -39.44381 -35.70033 -34.58665 -31.25792 -28.08640 -26.57075 -25.90844 -22.81176 -21.77065 -20.35190 -19.04402 -17.47031 -16.88640 -16.56312 -16.17622 -15.57775 -14.92456 -14.41198 -13.48224 -13.33124 -13.27717 -13.00635 -12.96812 -12.60512 -12.04660 -11.67444 -11.54017 -11.39392 -11.20894 -10.93600 -10.60838 -9.37322 -8.84620 -6.75694 1.11777 1.38259 1.55128 1.58280 2.16846 2.21154 2.96969 3.19032 3.74830 3.79956 3.88494 4.12423 4.34739 4.64320 4.73861 4.85704 4.93340 5.00979 5.04099 5.10525 5.14481 5.35952 5.63845 5.78900 5.97291 6.13769 6.52346 6.62381 7.82698 8.20472 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.102712 B = 0.008612 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.540502 B = 3250.531347 C = 3407.286573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.027 3.973 3 Si 1.017 2.983 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.465 4.465 8 H 0.111 0.889 9 C 0.310 3.690 10 N -0.645 5.645 11 C 0.019 3.981 12 C -0.041 4.041 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.236 4.236 17 O -0.214 6.214 18 H 0.298 0.702 19 H 0.089 0.911 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -6.134 0.721 6.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.192 4.192 3 Si 0.834 3.166 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.177 1.177 7 C -0.500 4.500 8 H 0.129 0.871 9 C 0.125 3.875 10 N -0.380 5.380 11 C -0.105 4.105 12 C -0.060 4.060 13 C -0.164 4.164 14 C -0.154 4.154 15 C -0.167 4.167 16 C -0.307 4.307 17 O -0.107 6.107 18 H 0.109 0.891 19 H 0.107 0.893 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.671 -6.118 0.721 6.197 hybrid contribution -0.582 0.852 -0.036 1.033 sum -1.254 -5.266 0.685 5.456 Atomic orbital electron populations 1.69770 1.09495 1.31969 1.32757 1.27257 0.95911 1.05542 0.90457 0.84748 0.78241 0.72965 0.80649 1.17675 1.18354 1.17670 1.18794 0.95209 0.86882 1.49125 0.87145 1.22703 0.77419 0.94555 0.92784 1.70785 1.33123 0.98666 1.35424 1.21970 0.89252 0.97148 1.02144 1.20979 1.00161 0.85358 0.99489 1.22989 0.96085 0.97046 1.00329 1.22778 1.00198 0.95675 0.96790 1.22890 1.00992 0.97745 0.95074 1.24719 1.00646 0.81465 1.23917 1.84781 1.26580 1.25827 1.73486 0.89100 0.89299 0.90244 0.90108 0.88258 0.89582 0.91232 0.91717 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.34 11.98 21.89 0.26 -44.08 15 2 C 0.03 1.41 5.50 85.38 0.47 1.88 15 3 Si 1.02 37.90 29.56 68.60 2.03 39.93 15 4 H -0.25 -9.04 7.11 99.48 0.71 -8.33 15 5 H -0.26 -8.90 7.11 99.48 0.71 -8.20 15 6 H -0.25 -9.03 7.11 99.48 0.71 -8.33 15 7 C -0.47 -27.00 9.45 23.16 0.22 -26.78 15 8 H 0.11 6.10 7.85 -2.91 -0.02 6.07 15 9 C 0.31 19.18 7.66 84.92 0.65 19.83 15 10 N -0.64 -38.26 11.34 -297.40 -3.37 -41.64 15 11 C 0.02 0.97 6.50 41.84 0.27 1.24 15 12 C -0.04 -1.55 4.28 -11.01 -0.05 -1.59 15 13 C -0.13 -3.62 7.47 31.18 0.23 -3.39 15 14 C -0.12 -2.73 8.09 31.18 0.25 -2.47 15 15 C -0.13 -4.08 7.63 31.12 0.24 -3.85 15 16 C -0.24 -12.16 11.39 67.29 0.77 -11.39 15 17 O -0.21 -13.05 9.06 -11.85 -0.11 -13.16 15 18 H 0.30 14.33 8.29 -92.71 -0.77 13.56 15 19 H 0.09 3.34 8.14 -2.39 -0.02 3.32 15 20 H 0.08 2.30 6.44 -2.39 -0.02 2.29 15 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.06 2.22 8.09 -2.39 -0.02 2.20 15 26 H 0.20 8.61 6.82 -2.92 -0.02 8.59 15 Total: -1.00 -69.70 229.44 3.04 -66.66 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.18 Total: 18.81 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.05 Total: -26.52 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -3.11 Total: -85.72 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.11 Total: -13.16 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -69.70 3.04 -66.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313413.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.733 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds