Wall clock time and date at job start Mon Mar 30 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 115.55027 * 2 1 4 4 C 1.35934 * 126.31828 * 34.41627 * 3 2 1 5 5 N 1.33063 * 107.97710 * 179.70329 * 4 3 2 6 6 C 1.32812 * 108.65152 * 0.26543 * 5 4 3 7 7 C 1.39802 * 125.79740 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99606 * 179.97438 * 7 6 5 9 9 C 1.40332 * 120.00103 * 359.97438 * 7 6 5 10 10 N 1.30630 * 120.00274 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47044 * 59.99759 * 11 9 7 13 13 H 1.48491 * 109.47101 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46888 * 300.00046 * 11 9 7 15 15 O 1.34599 * 126.31998 * 214.57146 * 3 2 1 16 16 C 1.52997 * 117.49975 * 145.67273 * 2 1 3 17 17 C 1.53006 * 117.49668 * 214.33575 * 2 1 3 18 18 H 1.08993 * 109.47250 * 85.57665 * 1 2 3 19 19 H 1.09001 * 109.46789 * 205.58449 * 1 2 3 20 20 H 1.09002 * 109.46932 * 325.58276 * 1 2 3 21 21 H 1.08002 * 126.01431 * 359.97392 * 4 3 2 22 22 H 0.96997 * 120.00065 * 179.97438 * 10 9 7 23 23 H 1.08993 * 117.49792 * 214.99774 * 16 2 1 24 24 H 1.08999 * 117.50188 * 0.02562 * 16 2 1 25 25 H 1.08999 * 117.49896 * 359.97059 * 17 2 1 26 26 H 1.09000 * 117.49907 * 144.96898 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 6 1.7120 2.4757 0.6191 5 7 2.5718 3.4647 0.3878 6 6 3.5625 2.9991 -0.3643 7 6 4.6604 3.7359 -0.8181 8 1 5.4152 3.2605 -1.4271 9 6 4.7819 5.0930 -0.4825 10 7 3.8687 5.6681 0.2537 11 14 6.2487 6.0778 -1.0896 12 1 6.2682 6.0723 -2.5744 13 1 6.1422 7.4762 -0.6016 14 1 7.5013 5.4676 -0.5759 15 8 3.3295 1.6938 -0.6154 16 6 2.2364 -1.1207 0.7653 17 6 2.2364 -1.1207 -0.7655 18 1 -0.3633 0.0793 -1.0245 19 1 -0.3633 -0.9269 0.4438 20 1 -0.3633 0.8478 0.5809 21 1 0.8045 2.5463 1.2004 22 1 3.9529 6.6061 0.4860 23 1 3.1713 -0.8747 1.2687 24 1 1.6113 -1.8583 1.2685 25 1 1.6112 -1.8582 -1.2687 26 1 3.1710 -0.8745 -1.2694 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333318.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:50 Heat of formation + Delta-G solvation = 9.420525 kcal Electronic energy + Delta-G solvation = -11686.843971 eV Core-core repulsion = 9538.692943 eV Total energy + Delta-G solvation = -2148.151029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.06296 -38.58779 -35.80313 -34.50172 -31.10614 -29.51963 -27.34500 -23.43801 -23.15752 -22.72591 -20.22858 -19.36623 -17.64688 -16.81717 -16.67171 -15.77392 -15.28111 -14.72713 -13.99641 -13.64655 -13.54064 -13.22327 -12.97536 -12.74531 -12.61704 -12.38632 -12.01709 -11.67293 -11.36995 -11.18425 -10.91596 -10.19557 -9.22838 -8.61461 -6.66546 1.05359 1.39072 1.55890 1.56533 2.15554 2.39990 2.66255 3.03929 3.27259 3.84144 3.89213 4.11831 4.24421 4.48626 4.72422 4.82502 4.88675 4.96094 4.99198 5.10981 5.19094 5.27372 5.32879 5.79226 5.97074 6.14468 6.50529 6.71387 7.93950 8.35200 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.077504 B = 0.009454 C = 0.008744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.183675 B = 2960.901023 C = 3201.553832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.044 4.044 3 C -0.156 4.156 4 C -0.030 4.030 5 N -0.576 5.576 6 C 0.293 3.707 7 C -0.472 4.472 8 H 0.098 0.902 9 C 0.029 3.971 10 N -0.773 5.773 11 Si 1.015 2.985 12 H -0.253 1.253 13 H -0.262 1.262 14 H -0.254 1.254 15 O -0.260 6.260 16 C -0.159 4.159 17 C -0.168 4.168 18 H 0.062 0.938 19 H 0.094 0.906 20 H 0.056 0.944 21 H 0.169 0.831 22 H 0.289 0.711 23 H 0.068 0.932 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -7.271 -0.871 7.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.044 4.044 3 C -0.210 4.210 4 C -0.173 4.173 5 N -0.307 5.307 6 C 0.108 3.892 7 C -0.507 4.507 8 H 0.116 0.884 9 C -0.192 4.192 10 N -0.398 5.398 11 Si 0.832 3.168 12 H -0.177 1.177 13 H -0.186 1.186 14 H -0.178 1.178 15 O -0.157 6.157 16 C -0.196 4.196 17 C -0.205 4.205 18 H 0.081 0.919 19 H 0.113 0.887 20 H 0.076 0.924 21 H 0.186 0.814 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.240 -6.474 -0.555 6.873 hybrid contribution 0.554 -0.057 -0.291 0.629 sum -1.686 -6.531 -0.846 6.798 Atomic orbital electron populations 1.21281 0.88379 1.03354 1.02502 1.19393 0.94911 0.82645 1.07479 1.22431 0.91001 0.98212 1.09334 1.23273 1.01174 0.89876 1.02945 1.71358 1.05689 1.29936 1.23740 1.22832 0.95927 0.77293 0.93127 1.18644 1.04566 0.95191 1.32267 0.88354 1.27069 1.01039 0.97628 0.93446 1.70088 1.32398 1.12929 1.24337 0.84796 0.75867 0.76490 0.79621 1.17731 1.18583 1.17753 1.84342 1.38588 1.29659 1.63124 1.23243 1.02052 1.00101 0.94241 1.23059 1.02120 1.00591 0.94771 0.91867 0.88728 0.92445 0.81351 0.90086 0.91287 0.84863 0.85339 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 9.79 71.98 0.70 -2.01 15 2 C -0.04 -1.58 2.62 -52.93 -0.14 -1.72 15 3 C -0.16 -7.79 6.69 25.15 0.17 -7.63 15 4 C -0.03 -1.58 11.20 83.97 0.94 -0.64 15 5 N -0.58 -35.75 9.43 -309.37 -2.92 -38.67 15 6 C 0.29 18.14 7.74 84.92 0.66 18.80 15 7 C -0.47 -27.50 9.45 23.16 0.22 -27.28 15 8 H 0.10 5.30 7.85 -2.91 -0.02 5.27 15 9 C 0.03 1.55 5.50 85.38 0.47 2.02 15 10 N -0.77 -43.94 11.88 21.89 0.26 -43.68 15 11 Si 1.02 38.66 29.56 68.60 2.03 40.69 15 12 H -0.25 -9.18 7.11 99.48 0.71 -8.48 15 13 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 14 H -0.25 -9.19 7.11 99.48 0.71 -8.49 15 15 O -0.26 -15.04 10.54 -11.83 -0.12 -15.17 15 16 C -0.16 -4.86 9.88 30.62 0.30 -4.56 15 17 C -0.17 -5.30 9.90 30.62 0.30 -4.99 15 18 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.09 1.90 7.90 -2.39 -0.02 1.88 15 20 H 0.06 1.65 6.96 -2.39 -0.02 1.64 15 21 H 0.17 7.69 7.42 -2.91 -0.02 7.67 15 22 H 0.29 14.57 8.29 -92.71 -0.77 13.80 15 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.13 2.95 8.05 -2.39 -0.02 2.93 15 25 H 0.13 3.04 8.14 -2.39 -0.02 3.02 15 26 H 0.07 2.53 7.97 -2.39 -0.02 2.51 15 Total: -1.00 -71.66 234.37 4.05 -67.61 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.18 Total: 17.23 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.63 Total: -28.01 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.66 Total: -82.35 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.12 Total: -15.17 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -71.66 4.05 -67.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333318.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.029 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds