Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30940 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46926 * 299.99529 * 3 2 1 6 6 H 1.48501 * 109.47378 * 60.00018 * 3 2 1 7 7 C 1.39903 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99665 * 161.56062 * 7 2 1 9 9 C 1.40824 * 120.00446 * 341.55699 * 7 2 1 10 10 C 1.41503 * 120.34912 * 316.43888 * 9 7 2 11 11 N 1.38932 * 120.18877 * 0.02562 * 10 9 7 12 12 C 1.38446 * 119.62633 * 179.74459 * 10 9 7 13 13 C 1.38471 * 120.35551 * 0.26904 * 12 10 9 14 14 C 1.38427 * 120.73633 * 359.96302 * 13 12 10 15 15 C 1.38477 * 120.35408 * 0.02562 * 14 13 12 16 16 N 1.38940 * 120.18036 * 180.02562 * 15 14 13 17 17 N 1.36595 * 120.00165 * 359.97438 * 16 15 14 18 18 H 0.96994 * 120.00274 * 355.11173 * 1 2 3 19 19 H 0.97007 * 120.00268 * 169.50631 * 11 10 9 20 20 H 0.96998 * 120.00118 * 349.23026 * 11 10 9 21 21 H 1.08000 * 119.82229 * 180.25215 * 12 10 9 22 22 H 1.08004 * 119.62894 * 179.97438 * 13 12 10 23 23 H 1.07999 * 119.82115 * 179.97438 * 14 13 12 24 24 H 0.96998 * 119.99175 * 180.02562 * 16 15 14 25 25 H 1.00901 * 110.99671 * 56.05321 * 17 16 15 26 26 H 1.00901 * 111.00172 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 3.7034 1.3465 -0.0006 5 1 1.8847 2.3964 -1.2126 6 1 1.8847 2.3965 1.2125 7 6 2.0089 -1.2116 0.0005 8 1 3.0474 -1.2356 -0.2953 9 6 1.3592 -2.3997 0.3869 10 6 0.5132 -2.4157 1.5210 11 7 0.3168 -1.2573 2.2625 12 6 -0.1224 -3.5908 1.8843 13 6 0.0707 -4.7474 1.1477 14 6 0.8988 -4.7498 0.0385 15 6 1.5491 -3.5912 -0.3518 16 7 2.3791 -3.5975 -1.4660 17 7 2.5558 -4.7489 -2.1795 18 1 -0.4850 0.8369 0.0716 19 1 -0.3746 -1.2279 2.9423 20 1 0.8736 -0.4792 2.1031 21 1 -0.7720 -3.6056 2.7470 22 1 -0.4306 -5.6577 1.4419 23 1 1.0391 -5.6603 -0.5250 24 1 2.8336 -2.7845 -1.7368 25 1 1.6712 -5.1189 -2.4937 26 1 3.1816 -4.6001 -2.9569 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306515107.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = 32.235979 kcal Electronic energy + Delta-G solvation = -11980.008251 eV Core-core repulsion = 9865.139325 eV Total energy + Delta-G solvation = -2114.868925 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.89790 -37.35889 -35.37311 -33.77220 -31.78284 -29.27289 -27.64092 -26.36265 -22.51685 -21.69445 -19.06346 -18.70312 -17.68018 -16.71184 -16.61906 -16.05481 -15.69682 -14.67384 -14.32400 -14.15758 -13.60733 -13.09217 -12.87058 -12.62413 -12.36968 -12.16618 -11.78842 -11.25596 -10.84025 -10.50402 -9.60773 -8.41939 -7.82705 -7.54786 -5.93189 1.18226 1.44617 1.50490 1.55127 1.56180 2.34958 2.65544 2.98018 3.80806 3.91872 4.49776 4.65784 4.96933 5.04121 5.33295 5.52397 5.65569 5.75468 6.00859 6.12373 6.29878 6.49262 6.59345 6.95626 7.19338 7.23552 7.52928 7.71016 7.84768 8.69575 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.035814 B = 0.016255 C = 0.011858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.632843 B = 1722.125835 C = 2360.670430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.039 3.961 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.056 0.944 9 C -0.044 4.044 10 C 0.197 3.803 11 N -0.851 5.851 12 C -0.255 4.255 13 C -0.118 4.118 14 C -0.238 4.238 15 C 0.166 3.834 16 N -0.602 5.602 17 N -0.600 5.600 18 H 0.272 0.728 19 H 0.383 0.617 20 H 0.389 0.611 21 H 0.105 0.895 22 H 0.119 0.881 23 H 0.111 0.889 24 H 0.398 0.602 25 H 0.326 0.674 26 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -1.965 -0.653 2.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.535 4.535 8 H 0.075 0.925 9 C -0.054 4.054 10 C 0.090 3.910 11 N -0.390 5.390 12 C -0.279 4.279 13 C -0.138 4.138 14 C -0.263 4.263 15 C 0.063 3.937 16 N -0.329 5.329 17 N -0.225 5.225 18 H 0.082 0.918 19 H 0.210 0.790 20 H 0.218 0.782 21 H 0.123 0.877 22 H 0.137 0.863 23 H 0.129 0.871 24 H 0.236 0.764 25 H 0.140 0.860 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.649 -2.319 -0.169 2.851 hybrid contribution -0.114 1.945 -0.934 2.160 sum 1.536 -0.375 -1.103 1.927 Atomic orbital electron populations 1.70028 1.07877 1.28858 1.40161 1.26091 0.94978 1.02139 0.93906 0.85673 0.79568 0.79247 0.78207 1.19247 1.20945 1.19224 1.18788 0.96814 0.92403 1.45545 0.92546 1.16855 1.02100 0.92499 0.93903 1.17882 0.96643 0.86547 0.89952 1.41949 1.41137 1.14005 1.41910 1.20258 1.09663 0.93131 1.04872 1.20435 1.00117 0.97015 0.96265 1.20120 1.06801 0.96593 1.02752 1.17871 0.93684 0.94565 0.87622 1.42849 1.54432 1.07635 1.27954 1.60157 1.16990 1.16952 1.28441 0.91787 0.79014 0.78157 0.87675 0.86290 0.87108 0.76424 0.86003 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.74 11.39 21.83 0.25 -43.49 15 2 C 0.04 1.93 3.42 85.23 0.29 2.22 15 3 Si 0.95 38.71 29.60 68.60 2.03 40.74 15 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 7 C -0.50 -26.32 7.68 23.31 0.18 -26.14 15 8 H 0.06 2.94 7.41 -2.91 -0.02 2.92 15 9 C -0.04 -2.32 5.31 -21.05 -0.11 -2.43 15 10 C 0.20 9.91 6.26 38.87 0.24 10.15 15 11 N -0.85 -38.61 7.63 -50.48 -0.39 -39.00 15 12 C -0.25 -11.73 9.87 22.37 0.22 -11.51 15 13 C -0.12 -5.18 10.02 22.37 0.22 -4.96 15 14 C -0.24 -10.81 9.33 22.37 0.21 -10.61 15 15 C 0.17 8.11 6.72 38.87 0.26 8.37 15 16 N -0.60 -25.30 6.56 -50.48 -0.33 -25.63 15 17 N -0.60 -19.71 9.58 37.02 0.35 -19.35 15 18 H 0.27 13.24 8.30 -92.71 -0.77 12.47 15 19 H 0.38 15.03 8.85 -92.70 -0.82 14.21 15 20 H 0.39 18.13 6.04 -92.71 -0.56 17.57 15 21 H 0.11 4.30 8.06 -2.91 -0.02 4.28 15 22 H 0.12 4.38 8.06 -2.91 -0.02 4.36 15 23 H 0.11 4.53 7.01 -2.91 -0.02 4.51 15 24 H 0.40 16.67 7.41 -215.50 -1.60 15.07 15 25 H 0.33 10.09 8.42 -210.56 -1.77 8.31 15 26 H 0.36 9.11 9.21 -210.56 -1.94 7.17 15 Total: -1.00 -59.55 223.46 -1.99 -61.55 By element: Atomic # 1 Polarization: 65.51 SS G_CDS: -5.43 Total: 60.09 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 1.52 Total: -34.90 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -0.11 Total: -127.47 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -59.55 -1.99 -61.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306515107.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.783 kcal (2) G-P(sol) polarization free energy of solvation -59.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds