Wall clock time and date at job start Mon Mar 30 2020 02:13:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30900 * 1
3 3 Si 1.86799 * 120.00062 * 2 1
4 4 H 1.48501 * 109.47027 * 274.64224 * 3 2 1
5 5 H 1.48507 * 109.46743 * 34.63808 * 3 2 1
6 6 H 1.48493 * 109.47352 * 154.63711 * 3 2 1
7 7 C 1.39890 * 119.99850 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99824 * 162.94269 * 7 2 1
9 9 C 1.41018 * 120.00450 * 342.93839 * 7 2 1
10 10 C 1.40668 * 120.26504 * 334.26324 * 9 7 2
11 11 C 1.38017 * 119.76844 * 179.97438 * 10 9 7
12 12 N 1.39850 * 119.83822 * 179.97438 * 11 10 9
13 13 C 1.39603 * 120.32096 * 359.97438 * 11 10 9
14 14 C 1.38059 * 120.54467 * 0.04799 * 13 11 10
15 15 C 1.38732 * 120.22705 * 359.95050 * 14 13 11
16 16 N 1.38863 * 120.16608 * 180.29900 * 15 14 13
17 17 N 1.36607 * 119.99695 * 359.72386 * 16 15 14
18 18 H 0.96998 * 120.00416 * 359.97438 * 1 2 3
19 19 H 1.07993 * 120.11770 * 359.95317 * 10 9 7
20 20 H 0.97004 * 120.00264 * 359.97438 * 12 11 10
21 21 H 0.97001 * 120.00047 * 179.97438 * 12 11 10
22 22 H 1.07997 * 119.72273 * 180.02562 * 13 11 10
23 23 H 1.08009 * 119.87941 * 179.97438 * 14 13 11
24 24 H 0.96995 * 120.00141 * 179.72655 * 16 15 14
25 25 H 1.00895 * 111.00021 * 56.04713 * 17 16 15
26 26 H 1.00894 * 110.99991 * 180.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3090 0.0000 0.0000
3 14 2.2430 1.6177 0.0000
4 1 2.3924 2.1030 -1.3955
5 1 1.4928 2.6223 0.7958
6 1 3.5861 1.4139 0.5997
7 6 2.0084 -1.2115 -0.0005
8 1 3.0528 -1.2319 -0.2749
9 6 1.3499 -2.4061 0.3572
10 6 0.2260 -2.3704 1.2023
11 6 -0.4110 -3.5457 1.5455
12 7 -1.5282 -3.5119 2.3860
13 6 0.0546 -4.7680 1.0576
14 6 1.1568 -4.8184 0.2278
15 6 1.8143 -3.6508 -0.1317
16 7 2.9190 -3.7023 -0.9715
17 7 3.3643 -4.9053 -1.4412
18 1 -0.4851 0.8400 0.0004
19 1 -0.1371 -1.4266 1.5815
20 1 -1.8535 -2.6639 2.7266
21 1 -1.9779 -4.3365 2.6284
22 1 -0.4514 -5.6818 1.3320
23 1 1.5080 -5.7700 -0.1431
24 1 3.3745 -2.8842 -1.2244
25 1 2.6289 -5.3996 -1.9238
26 1 4.1704 -4.7852 -2.0360
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306700227.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:13:15
Heat of formation + Delta-G solvation = 46.789410 kcal
Electronic energy + Delta-G solvation = -11751.657573 eV
Core-core repulsion = 9637.419732 eV
Total energy + Delta-G solvation = -2114.237841 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-37.98204 -35.59902 -33.86009 -32.19263 -29.55394 -28.08099 -25.65380 -24.38194
-21.03512 -19.76722 -17.27494 -16.99131 -15.84858 -15.23377 -14.94695 -14.47205
-14.01785 -12.70336 -12.47187 -12.07900 -11.84883 -11.37707 -11.20177 -11.00282
-10.77551 -10.41710 -9.92211 -9.37953 -9.21838 -8.81524 -7.36249 -7.12420
-6.63471 -5.45409 -4.06790 2.90305 3.12323 3.17030 3.32946 3.49175
4.02027 4.33737 4.81939 5.17965 5.86819 6.03770 6.51208 6.68784
7.08572 7.22516 7.27451 7.44483 7.51301 7.83307 7.96841 8.03672
8.20426 8.49021 8.86031 8.88392 8.99606 9.10780 9.28842 9.53634
10.35299
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.029540 B = 0.015806 C = 0.010613
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 947.636223 B = 1771.040250 C = 2637.679986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.798 5.798
2 C 0.078 3.922
3 Si 0.900 3.100
4 H -0.274 1.274
5 H -0.277 1.277
6 H -0.263 1.263
7 C -0.468 4.468
8 H 0.070 0.930
9 C 0.103 3.897
10 C -0.207 4.207
11 C 0.179 3.821
12 N -0.898 5.898
13 C -0.264 4.264
14 C -0.131 4.131
15 C 0.084 3.916
16 N -0.609 5.609
17 N -0.601 5.601
18 H 0.275 0.725
19 H 0.118 0.882
20 H 0.384 0.616
21 H 0.379 0.621
22 H 0.083 0.917
23 H 0.093 0.907
24 H 0.395 0.605
25 H 0.312 0.688
26 H 0.335 0.665
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.129 -2.115 -0.572 2.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.425 5.425
2 C -0.138 4.138
3 Si 0.725 3.275
4 H -0.200 1.200
5 H -0.202 1.202
6 H -0.187 1.187
7 C -0.499 4.499
8 H 0.088 0.912
9 C 0.097 3.903
10 C -0.231 4.231
11 C 0.079 3.921
12 N -0.440 5.440
13 C -0.288 4.288
14 C -0.155 4.155
15 C -0.015 4.015
16 N -0.340 5.340
17 N -0.223 5.223
18 H 0.086 0.914
19 H 0.135 0.865
20 H 0.210 0.790
21 H 0.204 0.796
22 H 0.101 0.899
23 H 0.111 0.889
24 H 0.233 0.767
25 H 0.126 0.874
26 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 1.149 -2.298 0.088 2.571
hybrid contribution -0.005 1.406 -1.027 1.741
sum 1.144 -0.892 -0.940 1.728
Atomic orbital electron populations
1.69887 1.07296 1.28439 1.36846 1.25749 0.94641 1.00702 0.92748
0.86441 0.80792 0.81501 0.78719 1.19971 1.20247 1.18677 1.19105
0.97141 0.91333 1.42317 0.91197 1.16908 0.92509 0.89907 0.90989
1.20433 1.01776 0.95197 1.05739 1.17585 0.88131 0.94123 0.92296
1.42269 1.34356 1.09159 1.58174 1.19617 1.03639 0.94236 1.11297
1.19705 0.97931 0.95188 1.02659 1.17634 0.91340 0.94137 0.98414
1.42678 1.35567 1.01308 1.54478 1.60302 1.08408 1.10061 1.43502
0.91410 0.86467 0.78971 0.79588 0.89866 0.88854 0.76677 0.87372
0.85392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.93 10.99 55.55 0.61 -20.32 15
2 C 0.08 1.97 5.14 -17.33 -0.09 1.88 15
3 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 15
4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 15
5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15
6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15
7 C -0.47 -12.34 8.48 -37.91 -0.32 -12.66 15
8 H 0.07 1.75 6.70 -52.48 -0.35 1.40 15
9 C 0.10 2.77 5.57 -106.66 -0.59 2.18 15
10 C -0.21 -5.49 8.50 -38.75 -0.33 -5.82 15
11 C 0.18 4.32 6.74 -83.77 -0.56 3.75 15
12 N -0.90 -17.49 9.09 32.41 0.29 -17.20 15
13 C -0.26 -6.23 9.88 -39.14 -0.39 -6.62 15
14 C -0.13 -3.13 9.33 -39.46 -0.37 -3.49 15
15 C 0.08 2.09 6.73 -83.23 -0.56 1.53 15
16 N -0.61 -13.11 6.56 32.75 0.21 -12.89 15
17 N -0.60 -10.53 9.59 60.35 0.58 -9.95 15
18 H 0.28 6.62 8.30 -40.82 -0.34 6.28 15
19 H 0.12 3.21 6.22 -52.49 -0.33 2.88 15
20 H 0.38 6.96 8.83 -40.82 -0.36 6.60 15
21 H 0.38 6.30 8.84 -40.82 -0.36 5.94 15
22 H 0.08 1.77 8.06 -52.49 -0.42 1.35 15
23 H 0.09 2.05 7.01 -52.48 -0.37 1.68 15
24 H 0.40 8.26 7.05 -185.16 -1.30 6.96 15
25 H 0.31 5.21 8.41 -181.37 -1.53 3.68 15
26 H 0.34 4.66 9.21 -181.37 -1.67 2.99 15
LS Contribution 226.15 15.07 3.41 3.41
Total: -1.00 -29.29 226.15 -8.96 -38.26
By element:
Atomic # 1 Polarization: 29.88 SS G_CDS: -5.82 Total: 24.06 kcal
Atomic # 6 Polarization: -16.03 SS G_CDS: -3.21 Total: -19.24 kcal
Atomic # 7 Polarization: -62.05 SS G_CDS: 1.70 Total: -60.35 kcal
Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal
Total LS contribution 3.41 Total: 3.41 kcal
Total: -29.29 -8.96 -38.26 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306700227.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.047 kcal
(2) G-P(sol) polarization free energy of solvation -29.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.752 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.789 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds