Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86799 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47027 * 274.64224 * 3 2 1 5 5 H 1.48507 * 109.46743 * 34.63808 * 3 2 1 6 6 H 1.48493 * 109.47352 * 154.63711 * 3 2 1 7 7 C 1.39890 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99824 * 162.94269 * 7 2 1 9 9 C 1.41018 * 120.00450 * 342.93839 * 7 2 1 10 10 C 1.40668 * 120.26504 * 334.26324 * 9 7 2 11 11 C 1.38017 * 119.76844 * 179.97438 * 10 9 7 12 12 N 1.39850 * 119.83822 * 179.97438 * 11 10 9 13 13 C 1.39603 * 120.32096 * 359.97438 * 11 10 9 14 14 C 1.38059 * 120.54467 * 0.04799 * 13 11 10 15 15 C 1.38732 * 120.22705 * 359.95050 * 14 13 11 16 16 N 1.38863 * 120.16608 * 180.29900 * 15 14 13 17 17 N 1.36607 * 119.99695 * 359.72386 * 16 15 14 18 18 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 19 19 H 1.07993 * 120.11770 * 359.95317 * 10 9 7 20 20 H 0.97004 * 120.00264 * 359.97438 * 12 11 10 21 21 H 0.97001 * 120.00047 * 179.97438 * 12 11 10 22 22 H 1.07997 * 119.72273 * 180.02562 * 13 11 10 23 23 H 1.08009 * 119.87941 * 179.97438 * 14 13 11 24 24 H 0.96995 * 120.00141 * 179.72655 * 16 15 14 25 25 H 1.00895 * 111.00021 * 56.04713 * 17 16 15 26 26 H 1.00894 * 110.99991 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3924 2.1030 -1.3955 5 1 1.4928 2.6223 0.7958 6 1 3.5861 1.4139 0.5997 7 6 2.0084 -1.2115 -0.0005 8 1 3.0528 -1.2319 -0.2749 9 6 1.3499 -2.4061 0.3572 10 6 0.2260 -2.3704 1.2023 11 6 -0.4110 -3.5457 1.5455 12 7 -1.5282 -3.5119 2.3860 13 6 0.0546 -4.7680 1.0576 14 6 1.1568 -4.8184 0.2278 15 6 1.8143 -3.6508 -0.1317 16 7 2.9190 -3.7023 -0.9715 17 7 3.3643 -4.9053 -1.4412 18 1 -0.4851 0.8400 0.0004 19 1 -0.1371 -1.4266 1.5815 20 1 -1.8535 -2.6639 2.7266 21 1 -1.9779 -4.3365 2.6284 22 1 -0.4514 -5.6818 1.3320 23 1 1.5080 -5.7700 -0.1431 24 1 3.3745 -2.8842 -1.2244 25 1 2.6289 -5.3996 -1.9238 26 1 4.1704 -4.7852 -2.0360 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306700227.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = 25.520971 kcal Electronic energy + Delta-G solvation = -11752.579841 eV Core-core repulsion = 9637.419732 eV Total energy + Delta-G solvation = -2115.160110 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.79387 -37.26311 -35.71532 -33.92350 -31.42590 -29.78329 -27.52157 -26.15015 -22.92391 -21.57588 -19.14997 -18.67303 -17.51943 -17.00667 -16.62850 -16.20079 -15.64021 -14.47655 -14.29695 -13.93296 -13.67592 -13.15115 -12.99903 -12.69837 -12.46436 -12.11775 -11.81396 -11.23081 -11.03539 -10.55066 -9.20969 -8.83788 -8.51770 -7.23984 -5.99749 1.12083 1.41625 1.50314 1.55228 1.64358 2.26752 2.75053 2.92838 3.57353 3.95967 4.55125 4.69809 4.90085 5.24257 5.37784 5.46849 5.63790 5.82255 6.10462 6.14704 6.21188 6.38337 6.59225 6.98063 7.09722 7.14597 7.47805 7.51702 7.91571 8.49047 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.015806 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.636223 B = 1771.040250 C = 2637.679986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.035 3.965 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.494 4.494 8 H 0.073 0.927 9 C 0.070 3.930 10 C -0.233 4.233 11 C 0.173 3.827 12 N -0.884 5.884 13 C -0.269 4.269 14 C -0.138 4.138 15 C 0.070 3.930 16 N -0.610 5.610 17 N -0.600 5.600 18 H 0.281 0.719 19 H 0.099 0.901 20 H 0.391 0.609 21 H 0.395 0.605 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.395 0.605 25 H 0.322 0.678 26 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -2.443 -0.716 2.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.064 3.936 10 C -0.258 4.258 11 C 0.071 3.929 12 N -0.427 5.427 13 C -0.293 4.293 14 C -0.163 4.163 15 C -0.030 4.030 16 N -0.340 5.340 17 N -0.225 5.225 18 H 0.091 0.909 19 H 0.117 0.883 20 H 0.218 0.782 21 H 0.223 0.777 22 H 0.127 0.873 23 H 0.131 0.869 24 H 0.233 0.767 25 H 0.136 0.864 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.547 -2.646 -0.059 3.065 hybrid contribution -0.150 1.387 -0.987 1.709 sum 1.397 -1.259 -1.046 2.152 Atomic orbital electron populations 1.69960 1.08734 1.29591 1.37450 1.26571 0.95395 1.03902 0.91924 0.85316 0.79190 0.76904 0.78952 1.19127 1.19691 1.18529 1.19355 0.97466 0.92194 1.43518 0.90873 1.17288 0.93332 0.91160 0.91842 1.20427 1.02884 0.95409 1.07055 1.17693 0.88979 0.93659 0.92609 1.42128 1.33087 1.10473 1.56992 1.19956 1.03595 0.94951 1.10768 1.19994 0.97977 0.95653 1.02648 1.17800 0.92364 0.93932 0.98926 1.42600 1.34700 1.02621 1.54063 1.60152 1.09341 1.08319 1.44701 0.90900 0.88266 0.78210 0.77677 0.87321 0.86933 0.76678 0.86378 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.19 10.99 21.82 0.24 -43.95 15 2 C 0.04 1.80 5.14 85.23 0.44 2.24 15 3 Si 0.97 38.85 29.59 68.60 2.03 40.88 15 4 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 7 C -0.49 -26.44 8.48 23.35 0.20 -26.24 15 8 H 0.07 3.70 6.70 -2.91 -0.02 3.69 15 9 C 0.07 3.82 5.57 -21.18 -0.12 3.70 15 10 C -0.23 -12.55 8.50 22.81 0.19 -12.36 15 11 C 0.17 8.24 6.74 38.14 0.26 8.49 15 12 N -0.88 -33.30 9.09 -51.37 -0.47 -33.77 15 13 C -0.27 -12.26 9.88 22.56 0.22 -12.03 15 14 C -0.14 -6.44 9.33 22.35 0.21 -6.23 15 15 C 0.07 3.49 6.73 38.97 0.26 3.75 15 16 N -0.61 -25.72 6.56 -50.31 -0.33 -26.05 15 17 N -0.60 -19.88 9.59 37.02 0.35 -19.52 15 18 H 0.28 13.65 8.30 -92.71 -0.77 12.88 15 19 H 0.10 5.60 6.22 -2.91 -0.02 5.58 15 20 H 0.39 13.84 8.83 -92.71 -0.82 13.03 15 21 H 0.40 12.30 8.84 -92.71 -0.82 11.48 15 22 H 0.11 4.32 8.06 -2.91 -0.02 4.29 15 23 H 0.11 4.69 7.01 -2.91 -0.02 4.67 15 24 H 0.40 16.35 7.05 -215.50 -1.52 14.83 15 25 H 0.32 10.04 8.41 -210.56 -1.77 8.27 15 26 H 0.36 9.13 9.21 -210.56 -1.94 7.19 15 Total: -1.00 -61.93 226.15 -2.11 -64.03 By element: Atomic # 1 Polarization: 62.66 SS G_CDS: -5.60 Total: 57.06 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 1.66 Total: -38.68 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -0.20 Total: -123.30 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -61.93 -2.11 -64.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306700227.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.555 kcal (2) G-P(sol) polarization free energy of solvation -61.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds