Wall clock time and date at job start Mon Mar 30 2020 02:13:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30900 * 1
3 3 Si 1.86799 * 120.00062 * 2 1
4 4 H 1.48501 * 109.47027 * 274.64224 * 3 2 1
5 5 H 1.48507 * 109.46743 * 34.63808 * 3 2 1
6 6 H 1.48493 * 109.47352 * 154.63711 * 3 2 1
7 7 C 1.39890 * 119.99850 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99824 * 162.94269 * 7 2 1
9 9 C 1.41018 * 120.00450 * 342.93839 * 7 2 1
10 10 C 1.40668 * 120.26504 * 334.26324 * 9 7 2
11 11 C 1.38017 * 119.76844 * 179.97438 * 10 9 7
12 12 N 1.39850 * 119.83822 * 179.97438 * 11 10 9
13 13 C 1.39603 * 120.32096 * 359.97438 * 11 10 9
14 14 C 1.38059 * 120.54467 * 0.04799 * 13 11 10
15 15 C 1.38732 * 120.22705 * 359.95050 * 14 13 11
16 16 N 1.38863 * 120.16608 * 180.29900 * 15 14 13
17 17 N 1.36607 * 119.99695 * 359.72386 * 16 15 14
18 18 H 0.96998 * 120.00416 * 359.97438 * 1 2 3
19 19 H 1.07993 * 120.11770 * 359.95317 * 10 9 7
20 20 H 0.97004 * 120.00264 * 359.97438 * 12 11 10
21 21 H 0.97001 * 120.00047 * 179.97438 * 12 11 10
22 22 H 1.07997 * 119.72273 * 180.02562 * 13 11 10
23 23 H 1.08009 * 119.87941 * 179.97438 * 14 13 11
24 24 H 0.96995 * 120.00141 * 179.72655 * 16 15 14
25 25 H 1.00895 * 111.00021 * 56.04713 * 17 16 15
26 26 H 1.00894 * 110.99991 * 180.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3090 0.0000 0.0000
3 14 2.2430 1.6177 0.0000
4 1 2.3924 2.1030 -1.3955
5 1 1.4928 2.6223 0.7958
6 1 3.5861 1.4139 0.5997
7 6 2.0084 -1.2115 -0.0005
8 1 3.0528 -1.2319 -0.2749
9 6 1.3499 -2.4061 0.3572
10 6 0.2260 -2.3704 1.2023
11 6 -0.4110 -3.5457 1.5455
12 7 -1.5282 -3.5119 2.3860
13 6 0.0546 -4.7680 1.0576
14 6 1.1568 -4.8184 0.2278
15 6 1.8143 -3.6508 -0.1317
16 7 2.9190 -3.7023 -0.9715
17 7 3.3643 -4.9053 -1.4412
18 1 -0.4851 0.8400 0.0004
19 1 -0.1371 -1.4266 1.5815
20 1 -1.8535 -2.6639 2.7266
21 1 -1.9779 -4.3365 2.6284
22 1 -0.4514 -5.6818 1.3320
23 1 1.5080 -5.7700 -0.1431
24 1 3.3745 -2.8842 -1.2244
25 1 2.6289 -5.3996 -1.9238
26 1 4.1704 -4.7852 -2.0360
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306700227.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:13:15
Heat of formation + Delta-G solvation = 25.520971 kcal
Electronic energy + Delta-G solvation = -11752.579841 eV
Core-core repulsion = 9637.419732 eV
Total energy + Delta-G solvation = -2115.160110 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.79387 -37.26311 -35.71532 -33.92350 -31.42590 -29.78329 -27.52157 -26.15015
-22.92391 -21.57588 -19.14997 -18.67303 -17.51943 -17.00667 -16.62850 -16.20079
-15.64021 -14.47655 -14.29695 -13.93296 -13.67592 -13.15115 -12.99903 -12.69837
-12.46436 -12.11775 -11.81396 -11.23081 -11.03539 -10.55066 -9.20969 -8.83788
-8.51770 -7.23984 -5.99749 1.12083 1.41625 1.50314 1.55228 1.64358
2.26752 2.75053 2.92838 3.57353 3.95967 4.55125 4.69809 4.90085
5.24257 5.37784 5.46849 5.63790 5.82255 6.10462 6.14704 6.21188
6.38337 6.59225 6.98063 7.09722 7.14597 7.47805 7.51702 7.91571
8.49047
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.029540 B = 0.015806 C = 0.010613
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 947.636223 B = 1771.040250 C = 2637.679986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.830 5.830
2 C 0.035 3.965
3 Si 0.974 3.026
4 H -0.266 1.266
5 H -0.272 1.272
6 H -0.261 1.261
7 C -0.494 4.494
8 H 0.073 0.927
9 C 0.070 3.930
10 C -0.233 4.233
11 C 0.173 3.827
12 N -0.884 5.884
13 C -0.269 4.269
14 C -0.138 4.138
15 C 0.070 3.930
16 N -0.610 5.610
17 N -0.600 5.600
18 H 0.281 0.719
19 H 0.099 0.901
20 H 0.391 0.609
21 H 0.395 0.605
22 H 0.109 0.891
23 H 0.113 0.887
24 H 0.395 0.605
25 H 0.322 0.678
26 H 0.357 0.643
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.527 -2.443 -0.716 2.968
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.457 5.457
2 C -0.178 4.178
3 Si 0.796 3.204
4 H -0.191 1.191
5 H -0.197 1.197
6 H -0.185 1.185
7 C -0.525 4.525
8 H 0.091 0.909
9 C 0.064 3.936
10 C -0.258 4.258
11 C 0.071 3.929
12 N -0.427 5.427
13 C -0.293 4.293
14 C -0.163 4.163
15 C -0.030 4.030
16 N -0.340 5.340
17 N -0.225 5.225
18 H 0.091 0.909
19 H 0.117 0.883
20 H 0.218 0.782
21 H 0.223 0.777
22 H 0.127 0.873
23 H 0.131 0.869
24 H 0.233 0.767
25 H 0.136 0.864
26 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 1.547 -2.646 -0.059 3.065
hybrid contribution -0.150 1.387 -0.987 1.709
sum 1.397 -1.259 -1.046 2.152
Atomic orbital electron populations
1.69960 1.08734 1.29591 1.37450 1.26571 0.95395 1.03902 0.91924
0.85316 0.79190 0.76904 0.78952 1.19127 1.19691 1.18529 1.19355
0.97466 0.92194 1.43518 0.90873 1.17288 0.93332 0.91160 0.91842
1.20427 1.02884 0.95409 1.07055 1.17693 0.88979 0.93659 0.92609
1.42128 1.33087 1.10473 1.56992 1.19956 1.03595 0.94951 1.10768
1.19994 0.97977 0.95653 1.02648 1.17800 0.92364 0.93932 0.98926
1.42600 1.34700 1.02621 1.54063 1.60152 1.09341 1.08319 1.44701
0.90900 0.88266 0.78210 0.77677 0.87321 0.86933 0.76678 0.86378
0.82918
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -44.19 10.99 21.82 0.24 -43.95 15
2 C 0.04 1.80 5.14 85.23 0.44 2.24 15
3 Si 0.97 38.85 29.59 68.60 2.03 40.88 15
4 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15
5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15
6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15
7 C -0.49 -26.44 8.48 23.35 0.20 -26.24 15
8 H 0.07 3.70 6.70 -2.91 -0.02 3.69 15
9 C 0.07 3.82 5.57 -21.18 -0.12 3.70 15
10 C -0.23 -12.55 8.50 22.81 0.19 -12.36 15
11 C 0.17 8.24 6.74 38.14 0.26 8.49 15
12 N -0.88 -33.30 9.09 -51.37 -0.47 -33.77 15
13 C -0.27 -12.26 9.88 22.56 0.22 -12.03 15
14 C -0.14 -6.44 9.33 22.35 0.21 -6.23 15
15 C 0.07 3.49 6.73 38.97 0.26 3.75 15
16 N -0.61 -25.72 6.56 -50.31 -0.33 -26.05 15
17 N -0.60 -19.88 9.59 37.02 0.35 -19.52 15
18 H 0.28 13.65 8.30 -92.71 -0.77 12.88 15
19 H 0.10 5.60 6.22 -2.91 -0.02 5.58 15
20 H 0.39 13.84 8.83 -92.71 -0.82 13.03 15
21 H 0.40 12.30 8.84 -92.71 -0.82 11.48 15
22 H 0.11 4.32 8.06 -2.91 -0.02 4.29 15
23 H 0.11 4.69 7.01 -2.91 -0.02 4.67 15
24 H 0.40 16.35 7.05 -215.50 -1.52 14.83 15
25 H 0.32 10.04 8.41 -210.56 -1.77 8.27 15
26 H 0.36 9.13 9.21 -210.56 -1.94 7.19 15
Total: -1.00 -61.93 226.15 -2.11 -64.03
By element:
Atomic # 1 Polarization: 62.66 SS G_CDS: -5.60 Total: 57.06 kcal
Atomic # 6 Polarization: -40.34 SS G_CDS: 1.66 Total: -38.68 kcal
Atomic # 7 Polarization: -123.09 SS G_CDS: -0.20 Total: -123.30 kcal
Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal
Total: -61.93 -2.11 -64.03 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306700227.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.555 kcal
(2) G-P(sol) polarization free energy of solvation -61.928 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.627 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.521 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds