Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38218 * 119.95444 * 264.72890 * 10 9 7 12 12 C 1.38114 * 120.13022 * 179.72655 * 11 10 9 13 13 C 1.38973 * 120.03328 * 0.54442 * 12 11 10 14 14 N 1.39669 * 120.04887 * 179.70572 * 13 12 11 15 15 C 1.38795 * 119.90662 * 359.72765 * 13 12 11 16 16 C 1.38609 * 119.87247 * 0.02562 * 15 13 12 17 17 O 1.35902 * 120.01776 * 180.02562 * 16 15 13 18 18 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.08001 * 119.93478 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.98662 * 180.27060 * 12 11 10 23 23 H 0.97002 * 120.00134 * 180.02562 * 14 13 12 24 24 H 0.96999 * 119.99519 * 0.02562 * 14 13 12 25 25 H 1.07996 * 120.06332 * 180.02562 * 15 13 12 26 26 H 0.96693 * 114.00208 * 269.97263 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.3479 -3.2287 1.1915 12 6 4.8032 -4.5327 1.1964 13 6 4.9371 -5.2271 0.0001 14 7 5.4034 -6.5437 0.0041 15 6 4.6073 -4.6104 -1.1988 16 6 4.1459 -3.3033 -1.1987 17 8 3.8216 -2.6968 -2.3708 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6801 -0.8911 20 1 3.8751 -0.6805 0.8889 21 1 4.2490 -2.6890 2.1217 22 1 5.0595 -5.0114 2.1299 23 1 5.4969 -7.0276 -0.8314 24 1 5.6336 -6.9740 0.8423 25 1 4.7100 -5.1478 -2.1299 26 1 4.5573 -2.2279 -2.7878 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306718340.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -24.681883 kcal Electronic energy + Delta-G solvation = -11550.667372 eV Core-core repulsion = 9401.037552 eV Total energy + Delta-G solvation = -2149.629820 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.25395 -36.45756 -34.25215 -32.55735 -30.22306 -29.33115 -26.36451 -22.57039 -22.15714 -20.18072 -17.80944 -16.68941 -16.62034 -15.65009 -14.80881 -14.27823 -14.12810 -13.52607 -12.99136 -12.46764 -12.38169 -11.77571 -11.53133 -11.09100 -10.58109 -10.27713 -10.20867 -9.68094 -9.47841 -9.13090 -8.46036 -8.14967 -6.88941 -5.94599 -3.91077 1.89674 2.21233 3.35746 3.42519 3.45153 4.09723 4.36206 4.51548 4.97283 5.36265 5.46694 5.60886 5.96371 6.09343 6.34059 6.44635 6.67125 6.98132 7.06409 7.12199 7.33281 7.63159 7.79221 7.83203 7.99379 8.39224 8.65617 9.12643 9.66165 11.19167 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.058558 B = 0.009925 C = 0.009543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.044960 B = 2820.413167 C = 2933.462704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.028 3.972 10 C -0.109 4.109 11 C -0.064 4.064 12 C -0.205 4.205 13 C 0.201 3.799 14 N -0.886 5.886 15 C -0.225 4.225 16 C 0.147 3.853 17 O -0.485 6.485 18 H 0.262 0.738 19 H 0.020 0.980 20 H 0.023 0.977 21 H 0.122 0.878 22 H 0.113 0.887 23 H 0.392 0.608 24 H 0.393 0.607 25 H 0.116 0.884 26 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.328 -8.155 -0.376 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.537 4.537 8 H 0.089 0.911 9 C -0.009 4.009 10 C -0.111 4.111 11 C -0.083 4.083 12 C -0.227 4.227 13 C 0.098 3.902 14 N -0.427 5.427 15 C -0.248 4.248 16 C 0.102 3.898 17 O -0.293 6.293 18 H 0.072 0.928 19 H 0.038 0.962 20 H 0.041 0.959 21 H 0.140 0.860 22 H 0.131 0.869 23 H 0.219 0.781 24 H 0.220 0.780 25 H 0.134 0.866 26 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.581 -8.198 -0.267 14.191 hybrid contribution 0.801 0.652 -0.168 1.046 sum 12.381 -7.546 -0.435 14.506 Atomic orbital electron populations 1.69913 1.06240 1.26662 1.51615 1.24995 0.94713 0.98881 0.94900 0.86804 0.80309 0.83847 0.78467 1.20296 1.21451 1.19077 1.20944 0.88429 0.94458 1.49835 0.91064 1.18561 0.97363 0.88321 0.96683 1.20411 0.99620 0.99212 0.91829 1.20713 0.96325 0.93621 0.97652 1.20487 1.10419 0.96120 0.95721 1.17408 0.94385 0.84949 0.93418 1.42303 1.77252 1.12497 1.10655 1.20662 1.10846 0.96732 0.96607 1.18027 0.95768 0.90365 0.85664 1.84906 1.38505 1.71098 1.34805 0.92832 0.96159 0.95928 0.86007 0.86927 0.78052 0.77956 0.86599 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.76 13.96 55.43 0.77 -27.99 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 15 7 C -0.50 -14.84 9.65 -34.44 -0.33 -15.17 15 8 H 0.07 2.36 7.98 -52.49 -0.42 1.94 15 9 C 0.03 0.69 3.89 -29.03 -0.11 0.58 15 10 C -0.11 -2.38 5.09 -104.43 -0.53 -2.91 15 11 C -0.06 -1.24 9.66 -39.63 -0.38 -1.62 15 12 C -0.20 -3.39 9.89 -39.35 -0.39 -3.78 15 13 C 0.20 3.18 6.75 -83.81 -0.57 2.61 15 14 N -0.89 -10.13 9.09 32.40 0.29 -9.83 15 15 C -0.23 -3.92 9.83 -39.24 -0.39 -4.30 15 16 C 0.15 2.99 6.67 -39.25 -0.26 2.72 15 17 O -0.48 -9.66 12.63 -19.43 -0.25 -9.90 15 18 H 0.26 7.76 8.31 -40.82 -0.34 7.42 15 19 H 0.02 0.49 7.11 -51.93 -0.37 0.12 15 20 H 0.02 0.55 7.11 -51.93 -0.37 0.18 15 21 H 0.12 2.21 8.06 -52.49 -0.42 1.78 15 22 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 23 H 0.39 3.73 8.84 -40.82 -0.36 3.37 15 24 H 0.39 3.63 8.84 -40.82 -0.36 3.27 15 25 H 0.12 1.77 8.06 -52.49 -0.42 1.34 15 26 H 0.38 5.41 9.06 45.56 0.41 5.82 15 LS Contribution 232.24 15.07 3.50 3.50 Total: -1.00 -34.35 232.24 -5.31 -39.66 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -1.90 Total: 7.23 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.06 Total: -20.01 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 1.07 Total: -37.82 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.25 Total: -9.90 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -34.35 -5.31 -39.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306718340.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.975 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds