Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38218 * 119.95444 * 264.72890 * 10 9 7 12 12 C 1.38114 * 120.13022 * 179.72655 * 11 10 9 13 13 C 1.38973 * 120.03328 * 0.54442 * 12 11 10 14 14 N 1.39669 * 120.04887 * 179.70572 * 13 12 11 15 15 C 1.38795 * 119.90662 * 359.72765 * 13 12 11 16 16 C 1.38609 * 119.87247 * 0.02562 * 15 13 12 17 17 O 1.35902 * 120.01776 * 180.02562 * 16 15 13 18 18 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.08001 * 119.93478 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.98662 * 180.27060 * 12 11 10 23 23 H 0.97002 * 120.00134 * 180.02562 * 14 13 12 24 24 H 0.96999 * 119.99519 * 0.02562 * 14 13 12 25 25 H 1.07996 * 120.06332 * 180.02562 * 15 13 12 26 26 H 0.96693 * 114.00208 * 269.97263 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.3479 -3.2287 1.1915 12 6 4.8032 -4.5327 1.1964 13 6 4.9371 -5.2271 0.0001 14 7 5.4034 -6.5437 0.0041 15 6 4.6073 -4.6104 -1.1988 16 6 4.1459 -3.3033 -1.1987 17 8 3.8216 -2.6968 -2.3708 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6801 -0.8911 20 1 3.8751 -0.6805 0.8889 21 1 4.2490 -2.6890 2.1217 22 1 5.0595 -5.0114 2.1299 23 1 5.4969 -7.0276 -0.8314 24 1 5.6336 -6.9740 0.8423 25 1 4.7100 -5.1478 -2.1299 26 1 4.5573 -2.2279 -2.7878 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306718340.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -51.990608 kcal Electronic energy + Delta-G solvation = -11551.851567 eV Core-core repulsion = 9401.037552 eV Total energy + Delta-G solvation = -2150.814015 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.66939 -37.84814 -35.85141 -34.51029 -31.96424 -30.73761 -28.08213 -24.42500 -23.56491 -21.77901 -19.21328 -18.90238 -17.82741 -17.02394 -16.51102 -15.94838 -15.58395 -15.06890 -14.64608 -14.23816 -13.84994 -13.57667 -13.33547 -12.57031 -12.43934 -11.99412 -11.95329 -11.63839 -11.14278 -10.87895 -10.73597 -9.53952 -8.26679 -8.17587 -6.27526 0.51116 0.78188 1.37545 1.40384 1.52291 2.39485 2.95881 3.02615 3.09941 3.63350 4.11690 4.33346 4.45334 4.69823 4.91911 5.07627 5.17407 5.21609 5.42164 5.63168 5.63894 5.95378 6.02477 6.34005 6.65636 6.76972 7.06012 7.13625 7.34298 8.93329 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.058558 B = 0.009925 C = 0.009543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.044960 B = 2820.413167 C = 2933.462704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.508 4.508 8 H 0.016 0.984 9 C 0.037 3.963 10 C -0.158 4.158 11 C -0.072 4.072 12 C -0.206 4.206 13 C 0.216 3.784 14 N -0.865 5.865 15 C -0.233 4.233 16 C 0.134 3.866 17 O -0.508 6.508 18 H 0.266 0.734 19 H 0.025 0.975 20 H 0.027 0.973 21 H 0.125 0.875 22 H 0.146 0.854 23 H 0.406 0.594 24 H 0.408 0.592 25 H 0.137 0.863 26 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.663 -8.827 -0.144 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.546 4.546 8 H 0.034 0.966 9 C 0.000 4.000 10 C -0.160 4.160 11 C -0.091 4.091 12 C -0.228 4.228 13 C 0.111 3.889 14 N -0.407 5.407 15 C -0.256 4.256 16 C 0.089 3.911 17 O -0.319 6.319 18 H 0.074 0.926 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.143 0.857 22 H 0.164 0.836 23 H 0.235 0.765 24 H 0.238 0.762 25 H 0.155 0.845 26 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 13.961 -8.927 -0.038 16.572 hybrid contribution 0.070 0.651 -0.250 0.701 sum 14.031 -8.276 -0.288 16.293 Atomic orbital electron populations 1.70091 1.08457 1.28066 1.53200 1.26058 0.95662 1.03583 0.94244 0.85564 0.79466 0.77749 0.79247 1.19107 1.20884 1.16677 1.21194 0.91314 0.92462 1.49610 0.96559 1.18354 0.93770 0.91097 0.96803 1.20332 1.03465 0.98449 0.93780 1.20853 0.96357 0.94996 0.96895 1.20763 1.09536 0.95073 0.97455 1.17515 0.92463 0.86310 0.92641 1.42258 1.75318 1.10699 1.12377 1.20824 1.10816 0.95736 0.98264 1.18245 0.96177 0.91540 0.85151 1.84830 1.40441 1.71662 1.34977 0.92569 0.95705 0.95435 0.85718 0.83641 0.76502 0.76181 0.84480 0.74351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.88 13.96 21.45 0.30 -62.58 15 2 C 0.00 0.00 5.47 84.66 0.46 0.47 15 3 Si 0.96 45.68 27.47 68.60 1.88 47.57 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 15 6 H -0.24 -10.64 6.54 99.48 0.65 -9.99 15 7 C -0.51 -31.37 9.65 25.60 0.25 -31.12 15 8 H 0.02 1.13 7.98 -2.91 -0.02 1.11 15 9 C 0.04 1.85 3.89 29.10 0.11 1.97 15 10 C -0.16 -6.98 5.09 -19.74 -0.10 -7.08 15 11 C -0.07 -2.74 9.66 22.24 0.21 -2.52 15 12 C -0.21 -6.27 9.89 22.42 0.22 -6.05 15 13 C 0.22 6.19 6.75 38.20 0.26 6.44 15 14 N -0.86 -16.14 9.09 -51.41 -0.47 -16.61 15 15 C -0.23 -7.66 9.83 22.49 0.22 -7.44 15 16 C 0.13 5.42 6.67 22.49 0.15 5.57 15 17 O -0.51 -20.33 12.63 -92.45 -1.17 -21.50 15 18 H 0.27 16.16 8.31 -92.70 -0.77 15.39 15 19 H 0.02 1.20 7.11 -2.39 -0.02 1.18 15 20 H 0.03 1.32 7.11 -2.39 -0.02 1.31 15 21 H 0.12 4.48 8.06 -2.91 -0.02 4.45 15 22 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 23 H 0.41 5.96 8.84 -92.71 -0.82 5.14 15 24 H 0.41 5.65 8.84 -92.71 -0.82 4.83 15 25 H 0.14 3.82 8.06 -2.91 -0.02 3.79 15 26 H 0.40 11.30 9.06 -74.06 -0.67 10.63 15 Total: -1.00 -76.77 232.24 1.19 -75.57 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -1.14 Total: 17.31 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 1.79 Total: -39.77 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -0.17 Total: -79.19 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.17 Total: -21.50 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.57 kcal Total: -76.77 1.19 -75.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306718340.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.581 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds