Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48498 * 109.47062 * 239.99793 * 3 2 1 5 5 H 1.48505 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47130 * 119.99819 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41392 * 119.99829 * 17.84574 * 7 2 1 10 10 C 1.40715 * 120.24786 * 204.38409 * 9 7 2 11 11 C 1.37616 * 119.75074 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24523 * 0.02899 * 11 10 9 13 13 C 1.50701 * 119.74956 * 179.97438 * 12 11 10 14 14 O 1.42900 * 109.46982 * 89.99611 * 13 12 11 15 15 N 1.46298 * 113.99891 * 180.02562 * 14 13 12 16 16 C 1.38633 * 120.50204 * 0.24424 * 12 11 10 17 17 C 1.37626 * 120.24985 * 359.45268 * 16 12 11 18 18 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 19 19 H 1.08003 * 120.12445 * 0.02562 * 10 9 7 20 20 H 1.07993 * 119.88115 * 179.97438 * 11 10 9 21 21 H 1.09004 * 109.47041 * 329.99964 * 13 12 11 22 22 H 1.08998 * 109.47265 * 209.99502 * 13 12 11 23 23 H 1.00900 * 111.00501 * 180.02562 * 15 14 13 24 24 H 1.00896 * 110.99869 * 303.95061 * 15 14 13 25 25 H 1.07996 * 119.87768 * 179.70605 * 16 12 11 26 26 H 1.07992 * 120.12680 * 180.27380 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3522 -2.4071 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8068 -0.2859 12 6 0.0669 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6490 -6.3312 -0.5551 15 7 -2.3928 -7.5561 -0.8494 16 6 -0.4053 -3.5330 -1.5740 17 6 0.2211 -2.3628 -1.2102 18 1 -0.4851 0.8400 -0.0004 19 1 2.6932 -3.6954 0.7276 20 1 1.5421 -5.7616 0.0654 21 1 0.0913 -6.8403 -1.5455 22 1 -1.0835 -5.8981 -2.4945 23 1 -3.0978 -7.7284 -0.1485 24 1 -2.8014 -7.5183 -1.7711 25 1 -1.2705 -3.5018 -2.2196 26 1 -0.1511 -1.4146 -1.5689 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306894153.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -9.518499 kcal Electronic energy + Delta-G solvation = -11347.893710 eV Core-core repulsion = 9198.921424 eV Total energy + Delta-G solvation = -2148.972286 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.61084 -37.57381 -35.60395 -32.62168 -31.23240 -30.44990 -28.13910 -25.15745 -22.93009 -21.81776 -19.26084 -17.60239 -17.43601 -17.12133 -16.12308 -15.85364 -15.50917 -14.81627 -14.33270 -13.86901 -13.76834 -13.47700 -12.88750 -12.67666 -12.52633 -12.06448 -11.63134 -11.50344 -11.25105 -11.03023 -9.89787 -9.42784 -9.31198 -8.67663 -6.39001 0.81339 1.11170 1.37792 1.47216 1.51331 2.03359 2.19938 2.73410 3.70232 4.23959 4.33294 4.43789 4.54987 4.63761 4.73624 5.00853 5.12745 5.33007 5.41647 5.66518 5.90047 6.00099 6.05986 6.17937 6.29176 6.33650 6.65153 6.89389 6.98609 8.29237 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.083485 B = 0.008172 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.310861 B = 3425.695835 C = 3613.133334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.084 3.916 10 C -0.247 4.247 11 C -0.070 4.070 12 C -0.224 4.224 13 C 0.135 3.865 14 O -0.272 6.272 15 N -0.675 5.675 16 C -0.086 4.086 17 C -0.195 4.195 18 H 0.290 0.710 19 H 0.101 0.899 20 H 0.116 0.884 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.373 0.627 24 H 0.349 0.651 25 H 0.107 0.893 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -4.865 -2.976 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.097 0.903 9 C 0.082 3.918 10 C -0.267 4.267 11 C -0.089 4.089 12 C -0.227 4.227 13 C 0.058 3.942 14 O -0.286 6.286 15 N -0.245 5.245 16 C -0.105 4.105 17 C -0.215 4.215 18 H 0.101 0.899 19 H 0.119 0.881 20 H 0.134 0.866 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.187 0.813 24 H 0.160 0.840 25 H 0.125 0.875 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.798 -4.990 -2.700 5.952 hybrid contribution -0.680 1.264 -0.113 1.439 sum -2.478 -3.727 -2.812 5.286 Atomic orbital electron populations 1.69880 1.09175 1.30853 1.34892 1.26835 0.95493 1.04732 0.91009 0.85197 0.78751 0.75261 0.80174 1.18331 1.19093 1.18254 1.19899 0.98554 0.92498 1.41809 0.90273 1.18028 0.91721 0.93166 0.88883 1.21200 1.04784 0.93005 1.07677 1.20740 0.95106 0.97175 0.95851 1.19195 1.00674 0.93452 1.09356 1.20952 0.88853 0.93477 0.90877 1.90798 1.49893 1.39178 1.48738 1.64291 1.33729 1.17562 1.08913 1.20805 0.98089 0.92423 0.99143 1.21290 1.00613 0.96981 1.02582 0.89940 0.88074 0.86564 0.92282 0.92445 0.81270 0.83955 0.87492 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.62 10.95 21.83 0.24 -43.38 15 2 C 0.03 1.77 5.14 85.26 0.44 2.21 15 3 Si 0.99 38.18 29.59 68.60 2.03 40.21 15 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 7 C -0.50 -27.35 9.05 23.46 0.21 -27.14 15 8 H 0.08 4.15 7.91 -2.91 -0.02 4.13 15 9 C 0.08 4.70 5.57 -21.29 -0.12 4.58 15 10 C -0.25 -12.60 9.80 22.73 0.22 -12.38 15 11 C -0.07 -3.24 9.67 22.22 0.21 -3.03 15 12 C -0.22 -10.03 5.53 -19.67 -0.11 -10.14 15 13 C 0.13 4.88 6.50 71.24 0.46 5.35 15 14 O -0.27 -10.09 11.95 -50.16 -0.60 -10.69 15 15 N -0.68 -17.35 10.79 37.02 0.40 -16.95 15 16 C -0.09 -4.13 9.67 22.22 0.21 -3.92 15 17 C -0.20 -10.58 8.70 22.73 0.20 -10.39 15 18 H 0.29 13.84 8.30 -92.71 -0.77 13.07 15 19 H 0.10 4.84 8.06 -2.91 -0.02 4.81 15 20 H 0.12 4.65 8.06 -2.91 -0.02 4.63 15 21 H 0.06 1.99 8.08 -2.38 -0.02 1.97 15 22 H 0.06 1.83 8.08 -2.39 -0.02 1.81 15 23 H 0.37 7.72 9.25 -89.69 -0.83 6.89 15 24 H 0.35 7.03 9.18 -89.70 -0.82 6.21 15 25 H 0.11 4.56 8.06 -2.91 -0.02 4.54 15 26 H 0.10 5.82 6.16 -2.91 -0.02 5.80 15 Total: -1.00 -62.21 235.36 3.35 -58.86 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.45 Total: 26.81 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 1.74 Total: -54.86 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.64 Total: -60.32 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.60 Total: -10.69 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -62.21 3.35 -58.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306894153.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.342 kcal (2) G-P(sol) polarization free energy of solvation -62.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds