Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48496 * 109.47230 * 240.00449 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46915 * 120.00334 * 3 2 1 7 7 C 1.39914 * 119.99335 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99289 * 195.36189 * 7 2 1 9 9 C 1.41071 * 120.00434 * 15.36862 * 7 2 1 10 10 C 1.40847 * 120.27649 * 25.54639 * 9 7 2 11 11 C 1.36386 * 120.07811 * 179.97438 * 10 9 7 12 12 C 1.38905 * 120.66043 * 359.79724 * 11 10 9 13 13 C 1.38631 * 120.55241 * 0.46118 * 12 11 10 14 14 N 1.40049 * 120.05051 * 179.78826 * 13 12 11 15 15 N 1.36600 * 120.00046 * 359.73034 * 14 13 12 16 16 C 1.39401 * 119.90122 * 359.51932 * 13 12 11 17 17 N 1.39004 * 120.32448 * 180.22765 * 16 13 12 18 18 H 0.97001 * 119.99832 * 359.97438 * 1 2 3 19 19 H 1.08002 * 119.95791 * 359.97438 * 10 9 7 20 20 H 1.08002 * 119.67278 * 180.02562 * 11 10 9 21 21 H 1.07997 * 119.72703 * 180.25794 * 12 11 10 22 22 H 0.97001 * 119.99727 * 179.72354 * 14 13 12 23 23 H 1.00905 * 110.99783 * 56.04358 * 15 14 13 24 24 H 1.00896 * 111.00263 * 179.97438 * 15 14 13 25 25 H 0.97000 * 119.99880 * 359.97438 * 17 16 13 26 26 H 0.96994 * 120.00192 * 179.97438 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2780 2.7464 0.0006 6 1 3.0968 1.6962 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0594 -1.2286 0.2472 9 6 1.3408 -2.4115 -0.3249 10 6 0.1918 -2.3870 -1.1391 11 6 -0.4502 -3.5493 -1.4505 12 6 0.0196 -4.7672 -0.9755 13 6 1.1449 -4.8219 -0.1678 14 7 1.6069 -6.0551 0.3089 15 7 0.9452 -7.2047 -0.0174 16 6 1.8194 -3.6480 0.1646 17 7 2.9515 -3.6931 0.9700 18 1 -0.4850 0.8401 0.0004 19 1 -0.1814 -1.4467 -1.5172 20 1 -1.3304 -3.5230 -2.0757 21 1 -0.4981 -5.6788 -1.2349 22 1 2.3967 -6.0928 0.8707 23 1 0.8708 -7.3073 -1.0185 24 1 1.3924 -8.0091 0.3960 25 1 3.2755 -4.5442 1.3039 26 1 3.4174 -2.8735 1.1981 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306905093.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = 31.085015 kcal Electronic energy + Delta-G solvation = -11753.801214 eV Core-core repulsion = 9638.882380 eV Total energy + Delta-G solvation = -2114.918835 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.99482 -37.24636 -35.06617 -34.79201 -31.31220 -29.68257 -27.34256 -26.72305 -22.31753 -22.06494 -19.32137 -18.63026 -17.66441 -16.83451 -16.52518 -16.47205 -15.50812 -14.59973 -14.29342 -14.18296 -13.98690 -13.05046 -12.91139 -12.72003 -12.11853 -11.98128 -11.63515 -11.26452 -10.92752 -10.88111 -9.60130 -8.60548 -8.40904 -7.26858 -6.00499 1.15309 1.43257 1.49648 1.53870 1.62729 2.28825 2.47319 2.93437 3.67885 3.96037 4.41779 4.71280 4.92685 5.20395 5.33871 5.42843 5.59414 5.82595 6.04403 6.09150 6.35096 6.37858 6.75301 6.91990 7.07668 7.11627 7.44990 7.58984 7.70018 8.54004 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.061416 B = 0.011163 C = 0.009679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.795339 B = 2507.726471 C = 2892.281843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.193 4.193 11 C -0.129 4.129 12 C -0.248 4.248 13 C 0.157 3.843 14 N -0.612 5.612 15 N -0.603 5.603 16 C 0.040 3.960 17 N -0.876 5.876 18 H 0.280 0.720 19 H 0.096 0.904 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.396 0.604 23 H 0.329 0.671 24 H 0.361 0.639 25 H 0.385 0.615 26 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -6.163 0.390 7.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.094 0.906 9 C 0.049 3.951 10 C -0.215 4.215 11 C -0.149 4.149 12 C -0.272 4.272 13 C 0.054 3.946 14 N -0.342 5.342 15 N -0.229 5.229 16 C -0.064 4.064 17 N -0.422 5.422 18 H 0.090 0.910 19 H 0.114 0.886 20 H 0.118 0.882 21 H 0.130 0.870 22 H 0.235 0.765 23 H 0.143 0.857 24 H 0.176 0.824 25 H 0.213 0.787 26 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.769 -5.819 0.671 6.965 hybrid contribution 1.478 0.354 -0.104 1.523 sum 5.247 -5.465 0.567 7.597 Atomic orbital electron populations 1.69957 1.08874 1.29629 1.38209 1.26631 0.95409 1.04109 0.92027 0.85308 0.78580 0.76298 0.79723 1.18903 1.20041 1.18422 1.19358 0.96970 0.91793 1.44186 0.90594 1.17352 0.93837 0.91236 0.92642 1.20736 1.00294 0.96864 1.03576 1.20310 0.99765 0.92810 1.02034 1.19932 1.00714 0.97022 1.09490 1.16933 0.95845 0.82905 0.98912 1.42723 1.32301 0.99472 1.59718 1.60048 1.50107 0.96484 1.16247 1.17505 0.94548 0.92131 1.02256 1.41430 1.31100 1.09839 1.59870 0.90952 0.88564 0.88216 0.86967 0.76547 0.85706 0.82447 0.78746 0.77843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.03 10.88 21.83 0.24 -45.79 15 2 C 0.03 1.59 5.18 85.24 0.44 2.03 15 3 Si 0.98 39.43 29.59 68.60 2.03 41.46 15 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 5 H -0.28 -10.74 7.11 99.48 0.71 -10.03 15 6 H -0.26 -9.98 7.11 99.48 0.71 -9.28 15 7 C -0.49 -26.49 8.51 23.37 0.20 -26.29 15 8 H 0.08 3.82 6.68 -2.91 -0.02 3.80 15 9 C 0.06 3.03 5.58 -21.18 -0.12 2.91 15 10 C -0.19 -10.73 8.63 22.48 0.19 -10.54 15 11 C -0.13 -6.42 9.96 22.00 0.22 -6.21 15 12 C -0.25 -11.44 9.36 22.52 0.21 -11.23 15 13 C 0.16 7.00 6.72 38.20 0.26 7.25 15 14 N -0.61 -20.86 6.65 -51.00 -0.34 -21.20 15 15 N -0.60 -16.81 9.60 37.02 0.36 -16.45 15 16 C 0.04 1.95 6.81 39.05 0.27 2.22 15 17 N -0.88 -34.29 8.97 -49.96 -0.45 -34.74 15 18 H 0.28 14.11 8.30 -92.71 -0.77 13.34 15 19 H 0.10 5.63 6.13 -2.91 -0.02 5.61 15 20 H 0.10 4.49 8.06 -2.91 -0.02 4.46 15 21 H 0.11 4.64 7.00 -2.91 -0.02 4.62 15 22 H 0.40 11.59 7.02 -215.50 -1.51 10.08 15 23 H 0.33 8.76 8.42 -210.55 -1.77 6.99 15 24 H 0.36 7.13 9.21 -210.56 -1.94 5.20 15 25 H 0.38 12.13 7.01 -92.71 -0.65 11.48 15 26 H 0.39 15.32 7.06 -92.71 -0.65 14.67 15 Total: -1.00 -63.60 222.65 -1.75 -65.36 By element: Atomic # 1 Polarization: 56.48 SS G_CDS: -5.26 Total: 51.22 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 1.67 Total: -39.85 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -0.19 Total: -118.19 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -63.60 -1.75 -65.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306905093.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.441 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds